02102021_PCA_heatmap_afterfiltering
Gijsje
2/10/2021
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## format.pval, units## [1] "13-051-NA-IFNy" "13-051-NA-LPS" "13-051-NA-unstim"
## [4] "13-054-CC-IFNy" "13-054-CC-LPS" "13-054-CC-unstim"
## [7] "13-056-GFM-IFNy" "13-056-GFM-LPS" "13-056-GFM-TNFa"
## [10] "13-056-GFM-unstim" "13-056-GTS-unstim" "13-074-CC-IFNy"
## [13] "13-074-CC-LPS" "13-077-CC-IFNy" "13-077-CC-LPS"
## [16] "13-077-CC-unstim" "13-087-CC-IFNy" "13-087-CC-LPS"
## [19] "13-087-CC-unstim" "13-095-CC-unstim" "13-095-GFM-unstim"
## [22] "13-095-GTS-unstim" "14-002-CC-LPS" "14-002-CC-unstim"
## [25] "14-005-CC-LPS" "14-005-CC-unstim" "14-005-GFM-IFNy"
## [28] "14-005-GFM-LPS" "14-005-GFM-R848" "14-005-GFM-TNFa"
## [31] "14-005-GFM-unstim" "14-005-GTS-LPS" "14-005-GTS-unstim"
## [34] "14-010-CC-LPS" "14-010-CC-unstim" "14-015-CC-LPS"
## [37] "14-015-CC-unstim" "14-015-GFM-LPS" "14-015-GFM-unstim"
## [40] "14-015-GTS-LPS" "14-015-GTS-unstim" "14-029-CC-LPS"
## [43] "14-029-CC-unstim" "14-029-GTS-LPS" "14-029-GTS-unstim"
## [46] "14-046-CC-IFNy" "14-046-CC-LPS" "14-046-CC-unstim"
## [49] "14-046-GFM-DEX" "14-046-GFM-IFNy" "14-046-GFM-IL4"
## [52] "14-046-GFM-LPS" "14-046-GFM-R848" "14-046-GFM-TNFa"
## [55] "14-046-GFM-unstim" "14-046-GTS-LPS" "14-046-GTS-unstim"
## [58] "14-048-CC-IFNy" "14-048-CC-LPS" "14-048-CC-unstim"
## [61] "14-051-GFM-LPS" "14-051-GFM-R848" "14-053-CC-IFNy"
## [64] "14-053-CC-LPS" "14-053-CC-unstim" "14-055-CC-IFNy"
## [67] "14-055-CC-LPS" "14-055-CC-unstim" "14-055-GFM-DEX"
## [70] "14-055-GFM-IFNy" "14-055-GFM-IL4" "14-055-GFM-LPS"
## [73] "14-055-GFM-TNFa" "14-055-GTS-LPS" "14-063-CC-IFNy"
## [76] "14-063-CC-LPS" "14-063-CC-unstim" "14-063-GTS-unstim"
## [79] "14-069-GFM-DEX" "14-069-GFM-IFNy" "14-069-GFM-IL4"
## [82] "14-069-GFM-LPS" "14-069-GFM-TNFa" "14-069-GFM-unstim"
## [85] "14-069-GTS-IFNy" "14-069-GTS-LPS" "14-069-GTS-unstim"
## [88] "14-069-SVZ-LPS" "14-069-SVZ-unstim" "14-074-CC-LPS"
## [91] "14-074-CC-unstim" "14-074-GFM-LPS" "14-074-GFM-unstim"
## [94] "14-075-GFM-IFNy" "14-075-GFM-LPS" "14-075-GFM-TNFa"
## [97] "14-075-GFM-unstim" "14-075-GTS-IFNy" "14-075-GTS-LPS"
## [100] "14-075-GTS-unstim" "14-078-GFM-DEX" "14-078-GFM-IL4"
## [103] "14-078-GFM-LPS" "14-078-GFM-unstim" "15-018-GFM-ATP"
## [106] "15-018-GFM-DEX" "15-018-GFM-IL4" "15-018-GFM-LPS"
## [109] "15-018-GFM-unstim" "15-021-THA-LPS" "15-021-THA-unstim"
## [112] "15-024-GFM_unstim" "15-024-GFM-ATP" "15-024-GFM-DEX"
## [115] "15-024-GFM-IL4" "15-024-GFM-LPS" "15-024-GFM-unstim"
## [118] "15-024-THA-unstim" "15-032-GTS-LPS" "15-032-GTS-unstim"
## [121] "15-041-GFM-LPS" "15-041-GFM-TNFa" "15-055-GFM-DEX"
## [124] "15-055-GFM-IL4" "15-055-GFM-unstim" "15-055-GTS-unstim"
## [127] "15-089-GTS-LPS" "15-089-GTS-unstim" "15-089-THA-LPS"
## [130] "15-089-THA-unstim" "16-003-GFM-IFNy" "16-003-GFM-LPS"
## [133] "16-003-GFM-R848" "16-003-GFM-TNFa" "16-003-GFM-unstim"
## [136] "16-003-GFS-IFNy" "16-003-GFS-LPS" "16-003-GFS-unstim"
## [139] "16-003-SVZ-IFNy" "16-003-SVZ-LPS" "16-003-SVZ-R848"
## [142] "16-003-SVZ-TNFa" "16-003-SVZ-unstim" "16-003-THA-IFNy"
## [145] "16-003-THA-LPS" "16-003-THA-unstim" "16-027-GFM-unstim"
## [148] "16-027-THA-LPS" "16-027-THA-unstim" "16-028-GFM-LPS"
## [151] "16-028-GFM-unstim" "16-028-GTS-LPS" "16-028-GTS-unstim"
## [154] "16-028-THA-LPS" "16-028-THA-unstim" "16-049-GFM-IFNy"
## [157] "16-049-GFM-LPS" "16-049-GFM-R848" "16-049-GFM-TNFa"
## [160] "16-049-GFM-unstim" "16-049-GTS-IFNy" "16-049-GTS-LPS"
## [163] "16-049-GTS-unstim" "16-049-SVZ-IFNy" "16-049-SVZ-LPS"
## [166] "16-049-SVZ-R848" "16-049-SVZ-TNFa" "16-049-SVZ-unstim"
## [169] "16-049-THA-LPS" "16-049-THA-unstim" "16-062-GFM-IFNy"
## [172] "16-062-GFM-LPS" "16-062-GFM-R848" "16-062-GFM-TNFa"
## [175] "16-062-GFM-unstim" "16-062-GTS-IFNy" "16-062-GTS-LPS"
## [178] "16-062-GTS-unstim" "16-062-SVZ-IFNy" "16-062-SVZ-LPS"
## [181] "16-062-SVZ-R848" "16-062-SVZ-TNFa" "16-062-SVZ-unstim"
## [184] "16-062-THA-IFNy" "16-062-THA-LPS" "16-062-THA-unstim"
## [187] "16-074-GFM-unstim" "16-080-SVZ-IFNy" "16-080-SVZ-LPS"
## [190] "16-080-SVZ-R848" "16-080-SVZ-TNFa" "16-080-SVZ-unstim"
## [193] "16-082-SVZ-ATP" "16-082-SVZ-IFNy" "16-082-SVZ-LPS"
## [196] "16-082-SVZ-R848" "16-082-SVZ-TNFa" "16-082-SVZ-unstim"
## [199] "16-110-GFM-IFNy" "16-110-GFM-LPS" "16-110-GFM-R848"
## [202] "16-110-GFM-TNFa" "16-110-GFM-unstim" "16-110-GTS-IFNy"
## [205] "16-110-GTS-LPS" "16-110-GTS-unstim" "16-110-SVZ-IFNy"
## [208] "16-110-SVZ-R848" "16-110-SVZ-TNFa" "16-110-SVZ-unstim"
## [211] "16-110-THA-LPS" "16-110-THA-unstim" "16-112-GFM-IFNy"
## [214] "16-112-GFM-LPS" "16-112-GFM-TNFa" "16-112-GFM-unstim"
## [217] "16-112-GTS-IFNy" "16-112-GTS-LPS" "16-112-GTS-unstim"
## [220] "16-112-SVZ-LPS" "16-112-SVZ-unstim" "16-112-THA-LPS"
## [223] "16-112-THA-unstim" "16-117-GFM-DEX" "16-117-GFM-IFNy"
## [226] "16-117-GFM-LPS" "16-117-GFM-R848" "16-117-GFM-TNFa"
## [229] "16-117-GFM-unstim" "16-117-GTS-unstim" "16-117-SVZ-IFNy"
## [232] "16-117-SVZ-LPS" "16-117-SVZ-R848" "16-117-SVZ-unstim"
## [235] "16-117-THA-IFNy" "16-117-THA-LPS" "16-117-THA-unstim"
## [238] "16-118-GFM-IFNy" "16-118-GFM-LPS" "16-118-GFM-R848"
## [241] "16-118-GFM-TNFa" "16-118-GFM-unstim" "16-118-GTS-IFNy"
## [244] "16-118-GTS-LPS" "16-118-GTS-unstim" "16-118-SVZ-IFNy"
## [247] "16-118-SVZ-LPS" "16-118-SVZ-R848" "16-118-SVZ-TNFa"
## [250] "16-118-SVZ-unstim" "16-137-SVZ-LPS" "16-137-SVZ-R848"
## [253] "16-137-SVZ-TNFa" "16-137-SVZ-unstim" "17-003-GTS-IFNy"
## [256] "17-003-GTS-LPS" "17-003-GTS-unstim" "17-003-SVZ-IFNy"
## [259] "17-003-SVZ-LPS" "17-003-SVZ-R848" "17-003-SVZ-TNFa"
## [262] "17-003-SVZ-unstim" "17-003-THA-IFNy" "17-003-THA-LPS"
## [265] "17-003-THA-unstim" "17-005-GFM-IFNy" "17-005-GFM-R848"
## [268] "17-005-GFM-TNFa" "17-005-GTS-IFNy" "17-005-SVZ-IFNy"
## [271] "17-005-SVZ-LPS" "17-005-SVZ-R848" "17-005-SVZ-TNFa"
## [274] "17-005-SVZ-unstim" "17-013-GFM-LPS" "17-013-GFM-unstim"
## [277] "17-013-SVZ-IFNy" "17-013-SVZ-LPS" "17-013-SVZ-R848"
## [280] "17-013-SVZ-TNFa" "17-013-SVZ-unstim" "17-017-GFM-IFNy"
## [283] "17-017-GFM-R848" "17-017-GFM-TNFa" "17-017-GFM-unstim"
## [286] "17-017-GTS-LPS" "17-017-GTS-unstim" "17-017-SVZ-IFNy"
## [289] "17-017-SVZ-LPS" "17-017-SVZ-R848" "17-017-SVZ-TNFa"
## [292] "17-017-SVZ-unstim" "17-017-THA-LPS" "17-021-SVZ-unstim"
## [295] "17-029-GFM-LPS" "17-029-GFM-unstim" "17-029-GTS-LPS"
## [298] "17-029-GTS-unstim" "17-029-SVZ-IFNy" "17-029-SVZ-LPS"
## [301] "17-029-SVZ-R848" "17-029-SVZ-TNFa" "17-029-SVZ-unstim"
## [304] "17-032-GTS-IFNy" "17-032-GTS-LPS" "17-032-GTS-unstim"
## [307] "17-032-SVZ-IFNy" "17-032-SVZ-LPS" "17-032-SVZ-R848"
## [310] "17-032-SVZ-TNFa" "17-032-SVZ-unstim" "17-032-THA-IFNy"
## [313] "17-032-THA-LPS" "17-032-THA-unstim" "17-043-GFM-IFNy"
## [316] "17-043-GFM-LPS" "17-043-GFM-R848" "17-043-GFM-TNFa"
## [319] "17-043-GFM-unstim" "17-043-GTS-unstim" "17-043-SVZ-LPS"
## [322] "17-043-SVZ-unstim" "17-043-THA-LPS" "17-043-THA-unstim"
## [325] "17-074-GFM-LPS" "17-074-GFM-unstim" "17-074-THA-LPS"
## [328] "17-074-THA-unstim" "17-078-GFM-IFNy" "17-078-GFM-LPS"
## [331] "17-078-GFM-R848" "17-078-GFM-TNFa" "17-078-GFM-unstim"
## [334] "17-078-SVZ-LPS" "17-078-SVZ-unstim" "17-090-SVZ-IFNy"
## [337] "17-094-GFM-IFNy" "17-094-GFM-LPS" "17-094-GFM-R848"
## [340] "17-094-GFM-TNFa" "17-094-GFM-unstim" "17-094-GTS-LPS"
## [343] "17-094-GTS-unstim" "17-094-SVZ-IFNy" "17-094-SVZ-LPS"
## [346] "17-094-SVZ-R848" "17-094-SVZ-TNFa" "17-094-SVZ-unstim"
## [349] "17-094-THA-IFNy" "17-094-THA-LPS" "17-094-THA-unstim"
## [352] "17-097-GFM-IFNy" "17-097-GFM-LPS" "17-097-GFM-R848"
## [355] "17-097-GFM-TNFa" "17-097-GFM-unstim" "17-097-GTS-LPS"
## [358] "17-097-GTS-unstim" "17-097-SVZ-IFNy" "17-097-SVZ-LPS"
## [361] "17-097-SVZ-R848" "17-097-SVZ-TNFa" "17-097-SVZ-unstim"
## [364] "17-099-GFM-IFNy" "17-099-GFM-LPS" "17-099-GFM-R848"
## [367] "17-099-GFM-TNFa" "17-099-GFM-unstim" "17-099-GTS-IFNy"
## [370] "17-099-GTS-LPS" "17-099-GTS-unstim" "17-099-SVZ-LPS"
## [373] "17-099-SVZ-R848" "17-099-SVZ-TNFa" "17-099-SVZ-unstim"
## [376] "17-099-THA-IFNy" "17-099-THA-LPS" "17-099-THA-unstim"
## [379] "17-102-GFM-LPS" "17-102-GFM-unstim" "17-102-GTS-LPS"
## [382] "17-102-GTS-unstim" "17-102-SVZ-IFNy" "17-102-SVZ-LPS"
## [385] "17-102-SVZ-R848" "17-102-SVZ-TNFa" "17-102-SVZ-unstim"
## [388] "17-102-THA-LPS" "17-102-THA-unstim" "17-124-GFM-LPS"
## [391] "17-124-GFM-unstim" "17-124-SVZ-IFNy" "17-124-SVZ-LPS"
## [394] "17-124-SVZ-R848" "17-124-SVZ-TNFa" "17-124-SVZ-unstim"
## [397] "17-124-THA-IFNy" "17-124-THA-LPS" "17-124-THA-unstim"
## [400] "17-136-GFM-IFNy" "17-136-GFM-LPS" "17-136-GFM-R848"
## [403] "17-136-GFM-TNFa" "17-136-GFM-unstim" "17-136-SVZ-LPS"
## [406] "17-136-SVZ-unstim" "17-148-GTS-LPS" "17-148-GTS-unstim"
## [409] "17-148-SVZ-LPS" "17-148-SVZ-unstim" "18-010-GFM-LPS"
## [412] "18-010-GFM-unstim" "18-010-GTS-IFNy" "18-010-GTS-LPS"
## [415] "18-010-GTS-unstim" "18-010-SVZ-IFNy" "18-010-SVZ-LPS"
## [418] "18-010-SVZ-R848" "18-010-SVZ-TNFa" "18-010-SVZ-unstim"
## [421] "18-010-THA-IFNy" "18-010-THA-LPS" "18-010-THA-unstim"
## [424] "18-018-GFM-ATP" "18-018-GFM-DEX" "18-018-GFM-IFNy"
## [427] "18-018-GFM-TNFa" "18-018-GFM-unstim" "18-018-SVZ-IFNy"
## [430] "18-018-SVZ-LPS" "18-018-SVZ-TNFa" "18-018-SVZ-unstim"
## [433] "18-018-THA-unstim" "18-0198-GFM-LPS" "18-021-GFM-DEX"
## [436] "18-021-GFM-LPS" "18-021-GFM-unstim" "18-021-GTS-LPS"
## [439] "18-021-GTS-unstim" "18-021-THA-LPS" "18-021-THA-unstim"
## [442] "18-039-SVZ-IFNy" "18-039-SVZ-R848" "18-039-SVZ-TNFa"
## [445] "18-064-GFM-ATP" "18-064-GFM-DEX" "18-064-GFM-IFNy"
## [448] "18-064-GFM-IL4" "18-064-GFM-LPS" "18-064-GFM-TNFa"
## [451] "18-064-GFM-unstim" "18-064-GTS-LPS" "18-064-GTS-unstim"
## [454] "18-064-THA-LPS" "18-064-THA-unstim" "18-074-GTS-LPS"
## [457] "18-074-GTS-unstim" "18-074-SVZ-IFNy" "18-074-SVZ-LPS"
## [460] "18-074-SVZ-R848" "18-074-SVZ-TNFa" "18-074-SVZ-unstim"
## [463] "18-079-GFM-LPS" "18-079-GFM-unstim" "18-079-SVZ-IFNy"
## [466] "18-079-SVZ-LPS" "18-079-SVZ-R848" "18-079-SVZ-TNFa"
## [469] "18-105-GFM-DEX" "18-105-GFM-LPS" "18-105-GFM-unstim"
## [472] "18-105-GTS-LPS" "18-105-GTS-unstim" "18-105-THA-LPS"
## [475] "18-105-THA-unstim" "18-112-GFM-ATP" "18-112-GFM-DEX"
## [478] "18-112-GFM-IFNy" "18-112-GFM-LPS" "18-112-GFM-unstim"
## [481] "18-112-GTS-LPS" "18-112-GTS-unstim" "18-118-GFM-IL4"
## [484] "MG-01-RNA" "MG-02-RNA" "MG-02-SVZ-RNA"
## [487] "MG-03-MGF-RNA" "MG-03-RNA" "MG-04-SVZ-RNA"
## [490] "MG-05-MGF-RNA" "MG-07-SVZ-RNA" "MG-08-CER-RNA"
## [493] "MG-09-SVZ-RNA" "MG-12-CER-RNA" "MG-12-MGF-RNA"
## [496] "MG-12-SVZ-RNA" "MG-13-CER-RNA" "MG-14-CER-RNA"
## [499] "MG-14-MGF-RNA" "MG-15-CER-RNA" "MG-15-MGF-RNA"
## [502] "MG-15-SN-RNA" "MG-15-SVZ-RNA" "MG-16-CER-RNA"
## [505] "MG-16-MGF-RNA" "MG-17-HIP-RNA" "MG-17-MGF-RNA"
## [508] "MG-17-SN-RNA" "MG-17-SVZ-RNA" "MG-18-HIP-RNA"
## [511] "MG-18-SN-RNA" "MG-18-SVZ-RNA" "MG-19-HIP-RNA"
## [514] "MG-19-MGF-RNA" "MG-19-SN-RNA" "MG-20-GFM-RNA"
## [517] "MG-20-MGF-RNA" "MG-20-SN-RNA" "MG-21-MGF-RNA"
## [520] "MG-22-HIP-RNA" "MG-22-MGF-RNA" "MG-22-SN-RNA"
## [523] "MG-23-HIP-RNA" "MG-23-MGF-RNA" "MG-23-SN-RNA"
## [526] "MG-24-HIP-RNA" "MG-24-MGF-RNA" "MG-24-SN-RNA"
## [529] "MG-25-HIP-RNA" "MG-25-MGF-RNA" "MG-26-DLPFC-RNA"
## [532] "MG-26-OCC-CORTEX-RNA" "MG-26-SN-RNA"## [1] "17-097-GTS-LPS" "17-097-GTS-unstim" "17-097-SVZ-IFNy"
## [4] "17-097-SVZ-LPS" "17-097-SVZ-R848" "17-097-SVZ-TNFa"
## [7] "17-097-SVZ-unstim" "17-099-GFM-IFNy" "17-099-GFM-LPS"
## [10] "17-099-GFM-R848" "17-099-GFM-TNFa" "17-099-GFM-unstim"
## [13] "17-099-GTS-IFNy" "17-099-GTS-LPS" "17-099-GTS-unstim"
## [16] "17-099-SVZ-LPS" "17-099-SVZ-R848" "17-099-SVZ-TNFa"
## [19] "17-099-SVZ-unstim" "17-099-THA-IFNy" "17-099-THA-LPS"
## [22] "17-099-THA-unstim" "17-102-GFM-LPS" "17-102-GFM-unstim"
## [25] "17-102-GTS-LPS" "17-102-GTS-unstim" "17-102-SVZ-IFNy"
## [28] "17-102-SVZ-LPS" "17-102-SVZ-R848" "17-102-SVZ-TNFa"
## [31] "17-102-SVZ-unstim" "17-102-THA-LPS" "17-102-THA-unstim"
## [34] "17-124-GFM-LPS" "17-124-GFM-unstim" "17-124-SVZ-IFNy"
## [37] "17-124-SVZ-LPS" "17-124-SVZ-R848" "17-124-SVZ-TNFa"
## [40] "17-124-SVZ-unstim" "17-124-THA-IFNy" "17-124-THA-LPS"
## [43] "17-124-THA-unstim" "17-136-GFM-IFNy" "17-136-GFM-LPS"
## [46] "17-136-GFM-R848" "17-136-GFM-TNFa" "17-136-GFM-unstim"
## [49] "17-136-SVZ-LPS" "17-136-SVZ-unstim" "17-148-GTS-LPS"
## [52] "17-148-GTS-unstim" "17-148-SVZ-LPS" "17-148-SVZ-unstim"
## [55] "18-010-GFM-LPS" "18-010-GFM-unstim" "18-010-GTS-IFNy"
## [58] "18-010-GTS-LPS" "18-010-GTS-unstim" "18-010-SVZ-IFNy"
## [61] "18-010-SVZ-LPS" "18-010-SVZ-R848" "18-010-SVZ-TNFa"
## [64] "18-010-SVZ-unstim" "18-010-THA-IFNy" "18-010-THA-LPS"
## [67] "18-010-THA-unstim" "18-018-GFM-ATP" "18-018-GFM-DEX"
## [70] "18-018-GFM-IFNy" "18-018-GFM-TNFa" "18-018-GFM-unstim"
## [73] "18-018-SVZ-IFNy" "18-018-SVZ-LPS" "18-018-SVZ-TNFa"
## [76] "18-018-SVZ-unstim" "18-018-THA-unstim" "18-0198-GFM-LPS"
## [79] "18-021-GFM-DEX" "18-021-GFM-LPS" "18-021-GFM-unstim"
## [82] "18-021-GTS-LPS" "18-021-GTS-unstim" "18-021-THA-LPS"
## [85] "18-021-THA-unstim" "18-039-SVZ-IFNy" "18-039-SVZ-R848"
## [88] "18-039-SVZ-TNFa" "18-064-GFM-ATP" "18-064-GFM-DEX"
## [91] "18-064-GFM-IFNy" "18-064-GFM-IL4" "18-064-GFM-LPS"
## [94] "18-064-GFM-TNFa" "18-064-GFM-unstim" "18-064-GTS-LPS"
## [97] "18-064-GTS-unstim" "18-064-THA-LPS" "18-064-THA-unstim"
## [100] "18-074-GTS-LPS" "18-074-GTS-unstim" "18-074-SVZ-IFNy"
## [103] "18-074-SVZ-LPS" "18-074-SVZ-R848" "18-074-SVZ-TNFa"
## [106] "18-074-SVZ-unstim" "18-079-GFM-LPS" "18-079-GFM-unstim"
## [109] "18-079-SVZ-IFNy" "18-079-SVZ-LPS" "18-079-SVZ-R848"
## [112] "18-079-SVZ-TNFa" "18-105-GFM-DEX" "18-105-GFM-LPS"
## [115] "18-105-GFM-unstim" "18-105-GTS-LPS" "18-105-GTS-unstim"
## [118] "18-105-THA-LPS" "18-105-THA-unstim" "18-112-GFM-ATP"
## [121] "18-112-GFM-DEX" "18-112-GFM-IFNy" "18-112-GFM-LPS"
## [124] "18-112-GFM-unstim" "18-112-GTS-LPS" "18-112-GTS-unstim"
## [127] "18-118-GFM-IL4" "MG-01-RNA" "MG-02-RNA"
## [130] "MG-02-SVZ-RNA" "MG-03-MGF-RNA" "MG-03-RNA"
## [133] "MG-04-SVZ-RNA" "MG-05-MGF-RNA" "MG-07-SVZ-RNA"
## [136] "MG-08-CER-RNA" "MG-09-SVZ-RNA" "MG-12-CER-RNA"
## [139] "MG-12-MGF-RNA" "MG-12-SVZ-RNA" "MG-13-CER-RNA"
## [142] "MG-14-CER-RNA" "MG-14-MGF-RNA" "MG-15-CER-RNA"
## [145] "MG-15-MGF-RNA" "MG-15-SN-RNA" "MG-15-SVZ-RNA"
## [148] "MG-16-CER-RNA" "MG-16-MGF-RNA" "MG-17-HIP-RNA"
## [151] "MG-17-MGF-RNA" "MG-17-SN-RNA" "MG-17-SVZ-RNA"
## [154] "MG-18-HIP-RNA" "MG-18-SN-RNA" "MG-18-SVZ-RNA"
## [157] "MG-19-HIP-RNA" "MG-19-MGF-RNA" "MG-19-SN-RNA"
## [160] "MG-20-GFM-RNA" "MG-20-MGF-RNA" "MG-20-SN-RNA"
## [163] "MG-21-MGF-RNA" "MG-22-HIP-RNA" "MG-22-MGF-RNA"
## [166] "MG-22-SN-RNA" "MG-23-HIP-RNA" "MG-23-MGF-RNA"
## [169] "MG-23-SN-RNA" "MG-24-HIP-RNA" "MG-24-MGF-RNA"
## [172] "MG-24-SN-RNA" "MG-25-HIP-RNA" "MG-25-MGF-RNA"
## [175] "MG-26-DLPFC-RNA" "MG-26-OCC-CORTEX-RNA" "MG-26-SN-RNA"
## [178] "16-062-SVZ-IFNy" "16-062-SVZ-LPS" "16-062-SVZ-R848"
## [181] "16-062-SVZ-TNFa" "16-062-SVZ-unstim" "16-062-THA-IFNy"
## [184] "16-062-THA-LPS" "16-062-THA-unstim" "16-074-GFM-unstim"
## [187] "16-080-SVZ-IFNy" "16-080-SVZ-LPS" "16-080-SVZ-R848"
## [190] "16-080-SVZ-TNFa" "16-080-SVZ-unstim" "16-082-SVZ-ATP"
## [193] "16-082-SVZ-IFNy" "16-082-SVZ-LPS" "16-082-SVZ-R848"
## [196] "16-082-SVZ-TNFa" "16-082-SVZ-unstim" "16-110-GFM-IFNy"
## [199] "16-110-GFM-LPS" "16-110-GFM-R848" "16-110-GFM-TNFa"
## [202] "16-110-GFM-unstim" "16-110-GTS-IFNy" "16-110-GTS-LPS"
## [205] "16-110-GTS-unstim" "16-110-SVZ-IFNy" "16-110-SVZ-R848"
## [208] "16-110-SVZ-TNFa" "16-110-SVZ-unstim" "16-110-THA-LPS"
## [211] "16-110-THA-unstim" "16-112-GFM-IFNy" "16-112-GFM-LPS"
## [214] "16-112-GFM-TNFa" "16-112-GFM-unstim" "16-112-GTS-IFNy"
## [217] "16-112-GTS-LPS" "16-112-GTS-unstim" "16-112-SVZ-LPS"
## [220] "16-112-SVZ-unstim" "16-112-THA-LPS" "16-112-THA-unstim"
## [223] "16-117-GFM-DEX" "16-117-GFM-IFNy" "16-117-GFM-LPS"
## [226] "16-117-GFM-R848" "16-117-GFM-unstim" "16-117-GTS-unstim"
## [229] "16-117-SVZ-IFNy" "16-117-SVZ-LPS" "16-117-SVZ-R848"
## [232] "16-117-SVZ-unstim" "16-117-THA-IFNy" "16-117-THA-LPS"
## [235] "16-117-THA-unstim" "16-118-GFM-IFNy" "16-118-GFM-LPS"
## [238] "16-118-GFM-R848" "16-118-GFM-TNFa" "16-118-GFM-unstim"
## [241] "16-118-GTS-IFNy" "16-118-GTS-LPS" "16-118-GTS-unstim"
## [244] "16-118-SVZ-IFNy" "16-118-SVZ-LPS" "16-118-SVZ-R848"
## [247] "16-118-SVZ-TNFa" "16-118-SVZ-unstim" "16-137-SVZ-LPS"
## [250] "16-137-SVZ-R848" "16-137-SVZ-TNFa" "16-137-SVZ-unstim"
## [253] "17-003-GTS-IFNy" "17-003-GTS-LPS" "17-003-GTS-unstim"
## [256] "17-003-SVZ-IFNy" "17-003-SVZ-LPS" "17-003-SVZ-R848"
## [259] "17-003-SVZ-TNFa" "17-003-SVZ-unstim" "17-003-THA-LPS"
## [262] "17-003-THA-unstim" "17-005-GFM-IFNy" "17-005-GFM-R848"
## [265] "17-005-GFM-TNFa" "17-005-GTS-IFNy" "17-005-SVZ-IFNy"
## [268] "17-005-SVZ-LPS" "17-005-SVZ-R848" "17-005-SVZ-TNFa"
## [271] "17-005-SVZ-unstim" "17-013-GFM-LPS" "17-013-GFM-unstim"
## [274] "17-013-SVZ-IFNy" "17-013-SVZ-LPS" "17-013-SVZ-R848"
## [277] "17-013-SVZ-TNFa" "17-013-SVZ-unstim" "17-017-GFM-IFNy"
## [280] "17-017-GFM-R848" "17-017-GFM-TNFa" "17-017-GFM-unstim"
## [283] "17-017-GTS-LPS" "17-017-GTS-unstim" "17-017-SVZ-IFNy"
## [286] "17-017-SVZ-LPS" "17-017-SVZ-R848" "17-017-SVZ-TNFa"
## [289] "17-017-SVZ-unstim" "17-017-THA-LPS" "17-021-SVZ-unstim"
## [292] "17-029-GFM-LPS" "17-029-GFM-unstim" "17-029-GTS-LPS"
## [295] "17-029-GTS-unstim" "17-029-SVZ-IFNy" "17-029-SVZ-LPS"
## [298] "17-029-SVZ-R848" "17-029-SVZ-TNFa" "17-029-SVZ-unstim"
## [301] "17-032-GTS-IFNy" "17-032-GTS-LPS" "17-032-GTS-unstim"
## [304] "17-032-SVZ-IFNy" "17-032-SVZ-LPS" "17-032-SVZ-R848"
## [307] "17-032-SVZ-TNFa" "17-032-SVZ-unstim" "17-032-THA-IFNy"
## [310] "17-032-THA-LPS" "17-032-THA-unstim" "17-043-GFM-IFNy"
## [313] "17-043-GFM-LPS" "17-043-GFM-R848" "17-043-GFM-TNFa"
## [316] "17-043-GFM-unstim" "17-043-GTS-unstim" "17-043-SVZ-LPS"
## [319] "17-043-SVZ-unstim" "17-043-THA-LPS" "17-043-THA-unstim"
## [322] "17-074-GFM-LPS" "17-074-GFM-unstim" "17-074-THA-LPS"
## [325] "17-074-THA-unstim" "17-078-GFM-IFNy" "17-078-GFM-LPS"
## [328] "17-078-GFM-R848" "17-078-GFM-TNFa" "17-078-GFM-unstim"
## [331] "17-078-SVZ-LPS" "17-078-SVZ-unstim" "17-090-SVZ-IFNy"
## [334] "17-094-GFM-IFNy" "17-094-GFM-LPS" "17-094-GFM-R848"
## [337] "17-094-GFM-TNFa" "17-094-GFM-unstim" "17-094-GTS-LPS"
## [340] "17-094-GTS-unstim" "17-094-SVZ-IFNy" "17-094-SVZ-LPS"
## [343] "17-094-SVZ-R848" "17-094-SVZ-TNFa" "17-094-SVZ-unstim"
## [346] "17-094-THA-IFNy" "17-094-THA-LPS" "17-094-THA-unstim"
## [349] "17-097-GFM-IFNy" "17-097-GFM-LPS" "17-097-GFM-R848"
## [352] "17-097-GFM-TNFa" "17-097-GFM-unstim" "13-051-NA-IFNy"
## [355] "13-051-NA-LPS" "13-051-NA-unstim" "13-054-CC-IFNy"
## [358] "13-054-CC-LPS" "13-054-CC-unstim" "13-056-GFM-IFNy"
## [361] "13-056-GFM-LPS" "13-056-GFM-TNFa" "13-056-GFM-unstim"
## [364] "13-056-GTS-unstim" "13-074-CC-LPS" "13-077-CC-IFNy"
## [367] "13-077-CC-LPS" "13-077-CC-unstim" "13-087-CC-IFNy"
## [370] "13-087-CC-LPS" "13-087-CC-unstim" "13-095-CC-unstim"
## [373] "13-095-GFM-unstim" "13-095-GTS-unstim" "14-002-CC-LPS"
## [376] "14-002-CC-unstim" "14-005-CC-unstim" "14-005-GFM-LPS"
## [379] "14-005-GFM-TNFa" "14-005-GFM-unstim" "14-005-GTS-LPS"
## [382] "14-005-GTS-unstim" "14-010-CC-LPS" "14-010-CC-unstim"
## [385] "14-015-CC-LPS" "14-015-CC-unstim" "14-015-GFM-LPS"
## [388] "14-015-GFM-unstim" "14-015-GTS-LPS" "14-015-GTS-unstim"
## [391] "14-029-CC-LPS" "14-029-CC-unstim" "14-029-GTS-LPS"
## [394] "14-046-CC-IFNy" "14-046-CC-unstim" "14-046-GFM-IFNy"
## [397] "14-046-GFM-IL4" "14-046-GFM-LPS" "14-046-GFM-TNFa"
## [400] "14-046-GFM-unstim" "14-046-GTS-LPS" "14-046-GTS-unstim"
## [403] "14-048-CC-IFNy" "14-048-CC-LPS" "14-048-CC-unstim"
## [406] "14-051-GFM-LPS" "14-051-GFM-R848" "14-053-CC-IFNy"
## [409] "14-053-CC-LPS" "14-053-CC-unstim" "14-055-CC-IFNy"
## [412] "14-055-CC-LPS" "14-055-CC-unstim" "14-055-GFM-DEX"
## [415] "14-055-GFM-IFNy" "14-055-GFM-IL4" "14-055-GFM-LPS"
## [418] "14-055-GFM-TNFa" "14-055-GTS-LPS" "14-063-CC-IFNy"
## [421] "14-063-CC-LPS" "14-063-CC-unstim" "14-069-GFM-DEX"
## [424] "14-069-GFM-IFNy" "14-069-GFM-IL4" "14-069-GFM-LPS"
## [427] "14-069-GFM-TNFa" "14-069-GFM-unstim" "14-069-GTS-IFNy"
## [430] "14-069-GTS-LPS" "14-069-GTS-unstim" "14-069-SVZ-LPS"
## [433] "14-069-SVZ-unstim" "14-074-CC-LPS" "14-074-CC-unstim"
## [436] "14-074-GFM-LPS" "14-074-GFM-unstim" "14-075-GFM-IFNy"
## [439] "14-075-GFM-LPS" "14-075-GFM-TNFa" "14-075-GFM-unstim"
## [442] "14-075-GTS-IFNy" "14-075-GTS-LPS" "14-075-GTS-unstim"
## [445] "14-078-GFM-DEX" "14-078-GFM-LPS" "14-078-GFM-unstim"
## [448] "15-018-GFM-ATP" "15-018-GFM-DEX" "15-018-GFM-IL4"
## [451] "15-018-GFM-LPS" "15-018-GFM-unstim" "15-021-THA-LPS"
## [454] "15-021-THA-unstim" "15-024-GFM_unstim" "15-024-GFM-ATP"
## [457] "15-024-GFM-DEX" "15-024-GFM-IL4" "15-024-GFM-LPS"
## [460] "15-024-THA-unstim" "15-032-GTS-LPS" "15-032-GTS-unstim"
## [463] "15-041-GFM-LPS" "15-041-GFM-TNFa" "15-055-GFM-DEX"
## [466] "15-055-GFM-IL4" "15-055-GFM-unstim" "15-055-GTS-unstim"
## [469] "15-089-GTS-LPS" "15-089-GTS-unstim" "15-089-THA-LPS"
## [472] "15-089-THA-unstim" "16-003-GFM-IFNy" "16-003-GFM-LPS"
## [475] "16-003-GFM-R848" "16-003-GFM-TNFa" "16-003-GFM-unstim"
## [478] "16-003-GFS-IFNy" "16-003-GFS-LPS" "16-003-GFS-unstim"
## [481] "16-003-SVZ-IFNy" "16-003-SVZ-LPS" "16-003-SVZ-R848"
## [484] "16-003-SVZ-TNFa" "16-003-SVZ-unstim" "16-003-THA-IFNy"
## [487] "16-003-THA-LPS" "16-003-THA-unstim" "16-027-GFM-unstim"
## [490] "16-027-THA-LPS" "16-027-THA-unstim" "16-028-GFM-LPS"
## [493] "16-028-GFM-unstim" "16-028-GTS-LPS" "16-028-GTS-unstim"
## [496] "16-028-THA-LPS" "16-028-THA-unstim" "16-049-GFM-IFNy"
## [499] "16-049-GFM-LPS" "16-049-GFM-R848" "16-049-GFM-TNFa"
## [502] "16-049-GFM-unstim" "16-049-GTS-IFNy" "16-049-GTS-LPS"
## [505] "16-049-GTS-unstim" "16-049-SVZ-IFNy" "16-049-SVZ-LPS"
## [508] "16-049-SVZ-R848" "16-049-SVZ-TNFa" "16-049-SVZ-unstim"
## [511] "16-049-THA-LPS" "16-049-THA-unstim" "16-062-GFM-IFNy"
## [514] "16-062-GFM-LPS" "16-062-GFM-R848" "16-062-GFM-TNFa"
## [517] "16-062-GFM-unstim" "16-062-GTS-IFNy" "16-062-GTS-LPS"
## [520] "16-062-GTS-unstim" "13-074-CC-IFNy" "14-005-CC-LPS"
## [523] "14-005-GFM-IFNy" "14-005-GFM-R848" "14-029-GTS-unstim"
## [526] "14-046-CC-LPS" "14-046-GFM-DEX" "14-046-GFM-R848"
## [529] "14-063-GTS-unstim" "14-078-GFM-IL4" "15-024-GFM-unstim"
## [532] "16-117-GFM-TNFa" "17-003-THA-IFNy"## 13-051-NA-IFNy 13-051-NA-LPS 13-051-NA-unstim 13-054-CC-IFNy
## ENSG00000000003.14 2.703016 2.488331 1.137021 0.9850463
## ENSG00000000419.12 4.134355 4.722128 4.798676 5.3955683
## ENSG00000000457.14 5.128996 5.267474 4.128414 4.0206702
## ENSG00000000460.17 3.263286 3.148255 2.309817 3.6780686
## ENSG00000000938.13 8.039083 7.861438 8.315557 7.1320816
## ENSG00000000971.15 4.528986 4.108483 3.377072 3.6173145
## 13-054-CC-LPS 13-054-CC-unstim 13-056-GFM-IFNy
## ENSG00000000003.14 1.690535 2.202149 2.185683
## ENSG00000000419.12 5.020036 4.996145 5.645115
## ENSG00000000457.14 4.479990 4.072720 4.836178
## ENSG00000000460.17 2.637955 3.306269 3.833201
## ENSG00000000938.13 6.579599 6.572133 7.280615
## ENSG00000000971.15 2.934461 3.397699 4.028958
## 13-056-GFM-LPS 13-056-GFM-TNFa 13-056-GFM-unstim
## ENSG00000000003.14 2.574796 0.4419907 0.6829548
## ENSG00000000419.12 5.259295 5.7025182 5.6539758
## ENSG00000000457.14 5.136675 3.7723579 4.1952966
## ENSG00000000460.17 2.989834 1.1858646 2.9911780
## ENSG00000000938.13 6.851364 7.4754137 7.2528104
## ENSG00000000971.15 4.811836 2.9780436 4.0179391
## 13-056-GTS-unstim 13-074-CC-IFNy 13-074-CC-LPS
## ENSG00000000003.14 0.3560764 2.886215 1.924794
## ENSG00000000419.12 5.8079215 5.359151 4.769143
## ENSG00000000457.14 3.8877218 5.893534 5.476590
## ENSG00000000460.17 2.1684957 3.347996 2.165802
## ENSG00000000938.13 7.2749397 6.056140 6.304566
## ENSG00000000971.15 3.1203050 4.686445 4.137788
## 13-077-CC-IFNy 13-077-CC-LPS 13-077-CC-unstim 13-087-CC-IFNy
## ENSG00000000003.14 2.861428 -2.674509 1.557637 4.599430
## ENSG00000000419.12 5.874564 5.669787 5.530871 5.361511
## ENSG00000000457.14 4.090341 4.858431 3.810025 3.523230
## ENSG00000000460.17 1.494831 2.940201 1.718102 2.171921
## ENSG00000000938.13 6.796198 5.852968 6.554983 6.866856
## ENSG00000000971.15 4.398694 4.793096 3.913118 3.211504
## 13-087-CC-LPS 13-087-CC-unstim 13-095-CC-unstim
## ENSG00000000003.14 4.5223854 5.2817712 3.983237
## ENSG00000000419.12 4.8327255 5.1487097 3.983237
## ENSG00000000457.14 3.9659921 3.9943815 6.051833
## ENSG00000000460.17 -0.1214708 0.6251477 4.242084
## ENSG00000000938.13 6.6987082 6.5819272 5.688494
## ENSG00000000971.15 -0.1214708 3.0098116 6.305165
## 13-095-GFM-unstim 13-095-GTS-unstim 14-002-CC-LPS
## ENSG00000000003.14 3.770965 2.1144129 1.803179
## ENSG00000000419.12 2.186002 -1.6297482 4.937035
## ENSG00000000457.14 4.680767 0.5718857 4.166194
## ENSG00000000460.17 4.250133 0.6921799 2.181690
## ENSG00000000938.13 5.520986 0.9063047 6.133100
## ENSG00000000971.15 5.819750 3.5640236 3.524025
## 14-002-CC-unstim 14-005-CC-LPS 14-005-CC-unstim
## ENSG00000000003.14 0.6332806 3.476047 2.849096
## ENSG00000000419.12 5.5215555 5.299667 5.303272
## ENSG00000000457.14 4.1830446 4.463396 5.099572
## ENSG00000000460.17 2.9719793 2.457609 2.851402
## ENSG00000000938.13 6.0595454 6.512787 6.233146
## ENSG00000000971.15 3.4166567 4.464551 4.637197
## 14-005-GFM-IFNy 14-005-GFM-LPS 14-005-GFM-R848
## ENSG00000000003.14 3.191366 1.688987 3.544467
## ENSG00000000419.12 4.903241 5.727122 4.993225
## ENSG00000000457.14 5.016801 3.446417 4.668079
## ENSG00000000460.17 2.740738 2.250866 2.882217
## ENSG00000000938.13 6.012865 7.500018 6.539585
## ENSG00000000971.15 5.252248 3.179313 5.487603
## 14-005-GFM-TNFa 14-005-GFM-unstim 14-005-GTS-LPS
## ENSG00000000003.14 2.381458 3.552493 4.091644
## ENSG00000000419.12 4.814418 5.285554 4.519065
## ENSG00000000457.14 5.592886 5.413214 6.667290
## ENSG00000000460.17 2.727044 4.087739 2.422696
## ENSG00000000938.13 6.513487 6.425189 5.423487
## ENSG00000000971.15 4.707229 5.331724 6.053842
## 14-005-GTS-unstim 14-010-CC-LPS 14-010-CC-unstim
## ENSG00000000003.14 3.475387 2.536135 0.2320698
## ENSG00000000419.12 5.545776 4.811142 5.2604782
## ENSG00000000457.14 5.792360 5.130684 4.1718093
## ENSG00000000460.17 3.233629 2.647167 1.9898689
## ENSG00000000938.13 6.197853 6.443026 6.1671009
## ENSG00000000971.15 4.946017 4.462135 2.7950060
## 14-015-CC-LPS 14-015-CC-unstim 14-015-GFM-LPS
## ENSG00000000003.14 1.591664 2.371416 2.023818
## ENSG00000000419.12 5.498554 5.127922 6.096763
## ENSG00000000457.14 4.290725 4.728243 3.504413
## ENSG00000000460.17 2.806646 2.610944 1.890116
## ENSG00000000938.13 6.428911 6.469129 5.872242
## ENSG00000000971.15 3.873234 3.769966 4.333416
## 14-015-GFM-unstim 14-015-GTS-LPS 14-015-GTS-unstim
## ENSG00000000003.14 2.718892 3.347980 2.649935
## ENSG00000000419.12 5.674692 6.050884 5.641322
## ENSG00000000457.14 5.226183 5.254785 5.243118
## ENSG00000000460.17 3.150745 3.222799 3.553340
## ENSG00000000938.13 5.595620 5.187044 5.675470
## ENSG00000000971.15 4.731275 5.307338 4.857530
## 14-029-CC-LPS 14-029-CC-unstim 14-029-GTS-LPS
## ENSG00000000003.14 2.001843 3.212359 0.6742464
## ENSG00000000419.12 4.648360 5.231899 3.7098703
## ENSG00000000457.14 4.545149 5.250029 4.0065247
## ENSG00000000460.17 3.951594 3.389378 3.6168547
## ENSG00000000938.13 6.692862 6.209076 4.9581682
## ENSG00000000971.15 2.208294 1.678927 1.2398436
## 14-029-GTS-unstim 14-046-CC-IFNy 14-046-CC-LPS
## ENSG00000000003.14 2.131856 0.03154638 0.8343766
## ENSG00000000419.12 4.789348 4.69785742 5.3066905
## ENSG00000000457.14 3.939329 4.88401530 3.2837900
## ENSG00000000460.17 3.805575 2.23661991 1.3069252
## ENSG00000000938.13 6.091732 7.22233939 7.2453561
## ENSG00000000971.15 2.430767 -5.64087896 -0.4238408
## 14-046-CC-unstim 14-046-GFM-DEX 14-046-GFM-IFNy
## ENSG00000000003.14 0.4989829 -5.6569696 -4.594811
## ENSG00000000419.12 5.4739242 -0.2307049 3.193091
## ENSG00000000457.14 2.6239861 -0.9020821 -1.053792
## ENSG00000000460.17 2.2958688 -4.0720071 2.025189
## ENSG00000000938.13 6.8212790 6.3712818 5.855369
## ENSG00000000971.15 0.8150104 -5.6569696 -4.594811
## 14-046-GFM-IL4 14-046-GFM-LPS 14-046-GFM-R848
## ENSG00000000003.14 -5.143817 -5.034147 -5.2674232
## ENSG00000000419.12 1.975124 -1.127256 -0.5125357
## ENSG00000000457.14 1.821967 -1.039567 1.1419677
## ENSG00000000460.17 1.231222 -1.703588 -1.1799604
## ENSG00000000938.13 5.258129 4.806631 6.1551672
## ENSG00000000971.15 -5.143817 -5.034147 -5.2674232
## 14-046-GFM-TNFa 14-046-GFM-unstim 14-046-GTS-LPS
## ENSG00000000003.14 -5.496025 4.003151 -0.2240105
## ENSG00000000419.12 2.999830 3.266186 5.1821266
## ENSG00000000457.14 -2.036593 6.158901 3.6718696
## ENSG00000000460.17 1.324154 3.576526 1.6338435
## ENSG00000000938.13 5.577447 3.266186 7.0639474
## ENSG00000000971.15 -3.911062 5.824181 -1.3862819
## 14-046-GTS-unstim 14-048-CC-IFNy 14-048-CC-LPS
## ENSG00000000003.14 -4.932268 -1.451107 1.012420
## ENSG00000000419.12 2.398649 5.821290 5.113579
## ENSG00000000457.14 -4.932268 2.550335 3.084665
## ENSG00000000460.17 -3.347305 1.339109 2.589563
## ENSG00000000938.13 5.526139 6.623926 7.255723
## ENSG00000000971.15 -4.932268 1.630687 2.858249
## 14-048-CC-unstim 14-051-GFM-LPS 14-051-GFM-R848
## ENSG00000000003.14 0.5573447 -0.466085 1.213434
## ENSG00000000419.12 5.7531716 5.067894 5.165768
## ENSG00000000457.14 3.6782159 5.492294 3.694526
## ENSG00000000460.17 3.1203967 3.097073 3.356436
## ENSG00000000938.13 7.0174890 6.617837 7.437629
## ENSG00000000971.15 2.8281986 4.518808 3.363994
## 14-053-CC-IFNy 14-053-CC-LPS 14-053-CC-unstim 14-055-CC-IFNy
## ENSG00000000003.14 -0.811391 -2.546827 3.176128 2.837213
## ENSG00000000419.12 4.952375 5.067214 5.271286 5.208469
## ENSG00000000457.14 4.723279 3.722920 4.921985 5.443552
## ENSG00000000460.17 2.123021 3.105555 2.246101 3.010757
## ENSG00000000938.13 8.178871 7.796763 6.137359 6.202394
## ENSG00000000971.15 -3.981316 -4.421296 5.444617 4.035570
## 14-055-CC-LPS 14-055-CC-unstim 14-055-GFM-DEX
## ENSG00000000003.14 2.619787 1.781024 0.07941692
## ENSG00000000419.12 4.985437 5.216410 5.41533711
## ENSG00000000457.14 5.311322 5.228723 3.49790420
## ENSG00000000460.17 2.105214 3.227520 3.56998705
## ENSG00000000938.13 6.466242 6.173341 8.06588571
## ENSG00000000971.15 4.617566 4.298872 -1.04833863
## 14-055-GFM-IFNy 14-055-GFM-IL4 14-055-GFM-LPS
## ENSG00000000003.14 -0.8881120 0.6414972 -1.2428198
## ENSG00000000419.12 5.2941641 5.8179313 5.1106663
## ENSG00000000457.14 4.3960567 3.3662997 3.9630298
## ENSG00000000460.17 3.1695446 3.3737916 2.1033188
## ENSG00000000938.13 7.2305820 7.3652970 7.6377056
## ENSG00000000971.15 0.1458354 -1.0843279 -0.1883721
## 14-055-GFM-TNFa 14-055-GTS-LPS 14-063-CC-IFNy 14-063-CC-LPS
## ENSG00000000003.14 -2.019848 1.5536481 1.118984 1.035872
## ENSG00000000419.12 5.454985 4.3728163 5.301509 5.005499
## ENSG00000000457.14 3.816077 4.5122171 5.122112 3.421027
## ENSG00000000460.17 2.907838 -0.4163589 2.900951 2.437867
## ENSG00000000938.13 7.571986 7.1738547 7.407303 7.099088
## ENSG00000000971.15 -1.282882 1.4899894 3.358414 2.338435
## 14-063-CC-unstim 14-063-GTS-unstim 14-069-GFM-DEX
## ENSG00000000003.14 2.342197 5.189637 0.8056077
## ENSG00000000419.12 4.881931 2.173335 5.2945434
## ENSG00000000457.14 4.501396 5.466384 3.7388370
## ENSG00000000460.17 2.887433 4.419328 2.5933441
## ENSG00000000938.13 6.998821 3.843186 7.8086784
## ENSG00000000971.15 3.653399 7.375681 3.4122653
## 14-069-GFM-IFNy 14-069-GFM-IL4 14-069-GFM-LPS
## ENSG00000000003.14 1.096509 1.407015 0.7504073
## ENSG00000000419.12 5.832413 6.284760 5.7370859
## ENSG00000000457.14 4.855163 4.214370 3.9918886
## ENSG00000000460.17 1.703926 2.709578 1.2002405
## ENSG00000000938.13 6.768934 6.190123 7.0860604
## ENSG00000000971.15 2.891689 3.018030 2.9667252
## 14-069-GFM-TNFa 14-069-GFM-unstim 14-069-GTS-IFNy
## ENSG00000000003.14 -0.1329336 -2.7139108 3.623823
## ENSG00000000419.12 5.7866308 6.1284395 5.132836
## ENSG00000000457.14 3.4186910 3.4047535 5.976060
## ENSG00000000460.17 1.9224254 1.7354305 4.062525
## ENSG00000000938.13 7.2849189 7.0281179 5.280935
## ENSG00000000971.15 2.4089602 0.9105801 5.756273
## 14-069-GTS-LPS 14-069-GTS-unstim 14-069-SVZ-LPS
## ENSG00000000003.14 4.210235 2.478605 1.264342
## ENSG00000000419.12 4.210235 5.681889 5.373775
## ENSG00000000457.14 6.047659 3.995682 2.772881
## ENSG00000000460.17 4.287283 2.909876 1.765809
## ENSG00000000938.13 5.901131 5.808107 7.235636
## ENSG00000000971.15 5.725385 5.430350 1.785174
## 14-069-SVZ-unstim 14-074-CC-LPS 14-074-CC-unstim
## ENSG00000000003.14 -0.2394152 2.792466 1.004483
## ENSG00000000419.12 5.3248346 5.294966 5.862464
## ENSG00000000457.14 3.5074633 4.831474 4.889189
## ENSG00000000460.17 2.2530452 2.794602 2.087034
## ENSG00000000938.13 6.9076558 7.628166 7.254518
## ENSG00000000971.15 1.6211817 3.652288 3.984305
## 14-074-GFM-LPS 14-074-GFM-unstim 14-075-GFM-IFNy
## ENSG00000000003.14 4.841819 2.320704 2.508741
## ENSG00000000419.12 4.441281 3.905667 5.189462
## ENSG00000000457.14 6.062337 5.292561 -1.578722
## ENSG00000000460.17 4.327246 4.310834 -1.578722
## ENSG00000000938.13 6.172464 6.210001 8.077703
## ENSG00000000971.15 5.412135 5.270663 -1.578722
## 14-075-GFM-LPS 14-075-GFM-TNFa 14-075-GFM-unstim
## ENSG00000000003.14 3.349054 -1.299340 5.141178
## ENSG00000000419.12 4.860953 5.689344 2.888791
## ENSG00000000457.14 3.452147 4.100514 3.930611
## ENSG00000000460.17 -1.405834 2.258927 3.659309
## ENSG00000000938.13 7.197792 7.348118 6.677845
## ENSG00000000971.15 -1.405834 -1.299340 4.823696
## 14-075-GTS-IFNy 14-075-GTS-LPS 14-075-GTS-unstim
## ENSG00000000003.14 -4.571230 -3.9401341 -4.086046
## ENSG00000000419.12 3.932596 4.8704375 4.865239
## ENSG00000000457.14 5.358738 3.0877719 3.141810
## ENSG00000000460.17 -2.394907 0.0140622 1.501919
## ENSG00000000938.13 9.882233 9.2321371 9.528319
## ENSG00000000971.15 -4.571230 -3.9401341 -4.086046
## 14-078-GFM-DEX 14-078-GFM-IL4 14-078-GFM-LPS
## ENSG00000000003.14 4.130933 3.968970 2.384942
## ENSG00000000419.12 5.099224 4.943879 3.969905
## ENSG00000000457.14 5.388731 4.463606 6.472405
## ENSG00000000460.17 3.999689 2.826882 3.232939
## ENSG00000000938.13 7.433920 6.776325 6.040294
## ENSG00000000971.15 5.335292 5.377775 5.719510
## 14-078-GFM-unstim 15-018-GFM-ATP 15-018-GFM-DEX
## ENSG00000000003.14 2.191408 4.014655 0.1909423
## ENSG00000000419.12 4.741606 2.429693 4.5367172
## ENSG00000000457.14 5.891848 5.048603 5.1740119
## ENSG00000000460.17 4.138941 3.529228 3.0065178
## ENSG00000000938.13 6.784933 6.251694 7.8275669
## ENSG00000000971.15 5.361333 6.761889 3.8154332
## 15-018-GFM-IL4 15-018-GFM-LPS 15-018-GFM-unstim
## ENSG00000000003.14 3.669336 3.279064 4.915237
## ENSG00000000419.12 3.669336 4.460671 4.316599
## ENSG00000000457.14 4.969798 4.015326 5.787229
## ENSG00000000460.17 3.629582 3.371074 3.451853
## ENSG00000000938.13 7.148806 7.411360 6.007495
## ENSG00000000971.15 4.492459 5.061064 5.454103
## 15-021-THA-LPS 15-021-THA-unstim 15-024-GFM_unstim
## ENSG00000000003.14 -2.1425731 3.006587 -4.004533
## ENSG00000000419.12 4.2852159 4.044061 5.686047
## ENSG00000000457.14 2.8144128 5.852050 2.674102
## ENSG00000000460.17 1.8764817 3.985168 2.762239
## ENSG00000000938.13 6.5288875 5.297818 8.158173
## ENSG00000000971.15 0.3752752 5.753239 -4.004533
## 15-024-GFM-ATP 15-024-GFM-DEX 15-024-GFM-IL4 15-024-GFM-LPS
## ENSG00000000003.14 0.01427003 -3.492198 -4.244158 -5.4436394
## ENSG00000000419.12 6.03744472 5.821139 5.840208 5.6576798
## ENSG00000000457.14 3.80052421 3.834879 4.172710 3.4642728
## ENSG00000000460.17 2.71341781 2.834196 3.031036 0.7194567
## ENSG00000000938.13 8.02498885 8.858244 7.900607 7.7753778
## ENSG00000000971.15 -5.76708968 -5.814126 -4.244158 -5.4436394
## 15-024-GFM-unstim 15-024-THA-unstim 15-032-GTS-LPS
## ENSG00000000003.14 3.047600 2.259228 0.5970991
## ENSG00000000419.12 5.157653 5.718659 4.0765685
## ENSG00000000457.14 5.165457 5.718659 3.2443250
## ENSG00000000460.17 2.392705 2.259228 2.5754825
## ENSG00000000938.13 6.500620 6.224124 6.5423178
## ENSG00000000971.15 4.849919 3.313676 -1.5183781
## 15-032-GTS-unstim 15-041-GFM-LPS 15-041-GFM-TNFa
## ENSG00000000003.14 -2.988083 -4.986205 -0.9888868
## ENSG00000000419.12 4.782305 6.164177 6.8782683
## ENSG00000000457.14 3.924247 3.092000 3.9075400
## ENSG00000000460.17 2.623089 1.564388 1.6839458
## ENSG00000000938.13 6.563304 6.537847 5.7877436
## ENSG00000000971.15 -2.251118 1.956310 1.1874359
## 15-055-GFM-DEX 15-055-GFM-IL4 15-055-GFM-unstim
## ENSG00000000003.14 0.1337488 -0.02788258 4.535851
## ENSG00000000419.12 6.2834959 6.96935963 4.767176
## ENSG00000000457.14 1.7187113 1.76140615 5.881173
## ENSG00000000460.17 0.1337488 1.13074169 3.972059
## ENSG00000000938.13 7.0285665 5.80050076 6.241107
## ENSG00000000971.15 0.1337488 -5.51973568 4.767176
## 15-055-GTS-unstim 15-089-GTS-LPS 15-089-GTS-unstim
## ENSG00000000003.14 1.752084 -3.1702796 4.174271
## ENSG00000000419.12 6.188122 6.2426430 4.174271
## ENSG00000000457.14 3.320378 -2.0922771 4.174271
## ENSG00000000460.17 1.291653 0.8196667 4.174271
## ENSG00000000938.13 6.824453 4.7702787 6.496199
## ENSG00000000971.15 1.221569 -6.3402046 4.174271
## 15-089-THA-LPS 15-089-THA-unstim 16-003-GFM-IFNy
## ENSG00000000003.14 0.2358857 2.1758998 2.457908
## ENSG00000000419.12 6.0687757 4.4978279 5.437730
## ENSG00000000457.14 1.8208482 0.5909373 3.508932
## ENSG00000000460.17 0.2358857 0.5909373 1.909038
## ENSG00000000938.13 6.2582535 5.5451336 6.168179
## ENSG00000000971.15 1.8208482 0.5909373 2.747414
## 16-003-GFM-LPS 16-003-GFM-R848 16-003-GFM-TNFa
## ENSG00000000003.14 0.1518172 -1.103541 -0.2306238
## ENSG00000000419.12 5.4470504 5.435618 5.2612293
## ENSG00000000457.14 1.7921296 2.817007 3.1123963
## ENSG00000000460.17 0.5109635 1.362173 1.7152563
## ENSG00000000938.13 6.6617241 6.896084 6.8383987
## ENSG00000000971.15 0.6372440 1.896700 1.7362093
## 16-003-GFM-unstim 16-003-GFS-IFNy 16-003-GFS-LPS
## ENSG00000000003.14 0.3338397 3.519180 2.258808
## ENSG00000000419.12 5.3065323 4.608818 4.954415
## ENSG00000000457.14 3.1914226 4.711132 4.114104
## ENSG00000000460.17 3.4488729 2.474092 2.864529
## ENSG00000000938.13 6.9157934 5.634658 5.496797
## ENSG00000000971.15 3.5037647 4.758281 2.689442
## 16-003-GFS-unstim 16-003-SVZ-IFNy 16-003-SVZ-LPS
## ENSG00000000003.14 1.955351 0.3264588 1.675139
## ENSG00000000419.12 5.102733 3.1338138 2.463635
## ENSG00000000457.14 4.280496 5.5894933 4.983892
## ENSG00000000460.17 2.786851 5.0045307 2.970595
## ENSG00000000938.13 6.437479 3.7858905 3.344991
## ENSG00000000971.15 2.411729 4.8500208 3.641972
## 16-003-SVZ-R848 16-003-SVZ-TNFa 16-003-SVZ-unstim
## ENSG00000000003.14 4.212189 0.9493057 -0.3108931
## ENSG00000000419.12 1.709689 2.3278173 4.2126689
## ENSG00000000457.14 5.334180 4.1024625 3.4581733
## ENSG00000000460.17 3.825166 2.1534464 0.4546417
## ENSG00000000938.13 3.825166 3.5815739 4.9989622
## ENSG00000000971.15 4.768583 3.9849296 2.1916072
## 16-003-THA-IFNy 16-003-THA-LPS 16-003-THA-unstim
## ENSG00000000003.14 1.041554 2.611975 -0.6081198
## ENSG00000000419.12 4.959715 4.543588 5.6834346
## ENSG00000000457.14 3.111539 3.286034 4.1995786
## ENSG00000000460.17 2.433709 3.527248 2.3906774
## ENSG00000000938.13 6.273763 6.192478 5.9917930
## ENSG00000000971.15 1.708978 3.471797 2.3304796
## 16-027-GFM-unstim 16-027-THA-LPS 16-027-THA-unstim
## ENSG00000000003.14 0.5535019 -0.3276495 -0.725912
## ENSG00000000419.12 5.0368934 4.9021812 5.256448
## ENSG00000000457.14 3.3440544 3.9475144 3.601137
## ENSG00000000460.17 1.2382025 2.8516939 2.679475
## ENSG00000000938.13 7.2677474 7.1663112 6.260246
## ENSG00000000971.15 2.1384644 1.2573130 3.202195
## 16-028-GFM-LPS 16-028-GFM-unstim 16-028-GTS-LPS
## ENSG00000000003.14 1.6239283 -1.1197302 4.541186
## ENSG00000000419.12 6.1919604 4.5129855 3.162674
## ENSG00000000457.14 3.5502314 2.7840497 5.221568
## ENSG00000000460.17 0.6782905 1.4544645 3.385067
## ENSG00000000938.13 6.1119290 4.6372110 4.613335
## ENSG00000000971.15 3.1659386 0.9611898 5.595633
## 16-028-GTS-unstim 16-028-THA-LPS 16-028-THA-unstim
## ENSG00000000003.14 3.924083 1.2998543 0.1501151
## ENSG00000000419.12 4.549234 5.7421835 6.0489684
## ENSG00000000457.14 4.861619 3.6402583 2.9682688
## ENSG00000000460.17 2.128903 0.9550365 1.4737521
## ENSG00000000938.13 4.611295 6.0388222 6.1188886
## ENSG00000000971.15 4.800329 2.5713242 0.8214924
## 16-049-GFM-IFNy 16-049-GFM-LPS 16-049-GFM-R848
## ENSG00000000003.14 -0.4010196 1.773305 0.5571469
## ENSG00000000419.12 5.4347601 5.419907 5.3010319
## ENSG00000000457.14 3.4788542 4.609807 3.3691448
## ENSG00000000460.17 1.5221567 2.380988 1.7000211
## ENSG00000000938.13 5.2616742 5.545895 5.4504095
## ENSG00000000971.15 0.3799503 3.609807 2.1421094
## 16-049-GFM-TNFa 16-049-GFM-unstim 16-049-GTS-IFNy
## ENSG00000000003.14 0.8861879 -1.99070082 1.254055
## ENSG00000000419.12 5.0291458 6.80436477 5.461812
## ENSG00000000457.14 3.1092671 0.03503675 4.612769
## ENSG00000000460.17 2.0864271 0.75947689 2.941116
## ENSG00000000938.13 5.4373620 3.82179741 6.004289
## ENSG00000000971.15 2.2398248 -4.31262891 2.567932
## 16-049-GTS-LPS 16-049-GTS-unstim 16-049-SVZ-IFNy
## ENSG00000000003.14 3.185665 3.220310 1.231243
## ENSG00000000419.12 5.602403 6.040102 5.970783
## ENSG00000000457.14 4.637255 5.667608 4.204199
## ENSG00000000460.17 3.186753 3.568920 1.600211
## ENSG00000000938.13 5.245647 4.917383 6.031219
## ENSG00000000971.15 4.251380 5.209339 1.626776
## 16-049-SVZ-LPS 16-049-SVZ-R848 16-049-SVZ-TNFa
## ENSG00000000003.14 -0.08877868 0.4434227 1.712880
## ENSG00000000419.12 6.21422475 6.2054742 6.375963
## ENSG00000000457.14 3.27000063 3.1533299 3.588734
## ENSG00000000460.17 1.50475310 1.7961691 2.263873
## ENSG00000000938.13 6.06528530 6.1684132 5.996213
## ENSG00000000971.15 -0.59897341 -2.8630754 -2.158605
## 16-049-SVZ-unstim 16-049-THA-LPS 16-049-THA-unstim
## ENSG00000000003.14 -0.1305502 0.2124854 0.746958
## ENSG00000000419.12 5.7085250 6.1731824 6.075550
## ENSG00000000457.14 3.6621777 3.3822822 3.636215
## ENSG00000000460.17 1.6377530 2.2831495 2.772906
## ENSG00000000938.13 6.6770676 6.0001268 5.962176
## ENSG00000000971.15 -2.0448203 1.8354158 1.922808
## 16-062-GFM-IFNy 16-062-GFM-LPS 16-062-GFM-R848
## ENSG00000000003.14 -1.682926 -0.008977225 0.1923208
## ENSG00000000419.12 5.614143 5.144527893 5.6957852
## ENSG00000000457.14 2.870189 2.631883601 2.1636205
## ENSG00000000460.17 1.784006 2.708623044 1.9629897
## ENSG00000000938.13 5.085258 4.672846815 4.6053076
## ENSG00000000971.15 -2.667619 0.280529392 -2.5301452
## 16-062-GFM-TNFa 16-062-GFM-unstim 16-062-GTS-IFNy
## ENSG00000000003.14 -2.037585 -0.7287315 0.3786298
## ENSG00000000419.12 5.641895 5.8664141 5.0540614
## ENSG00000000457.14 2.563837 2.2816187 3.5260751
## ENSG00000000460.17 1.741108 2.2015138 2.9405929
## ENSG00000000938.13 5.068524 5.3182833 5.1782903
## ENSG00000000971.15 -5.738025 -5.3725877 0.5088597
## 16-062-GTS-LPS 16-062-GTS-unstim 16-062-SVZ-IFNy
## ENSG00000000003.14 2.784658 1.143615 0.3430623
## ENSG00000000419.12 4.345969 5.031523 5.9028665
## ENSG00000000457.14 3.624814 3.638006 3.4564365
## ENSG00000000460.17 3.723563 3.518968 0.7253469
## ENSG00000000938.13 4.810810 5.247623 6.4091515
## ENSG00000000971.15 2.981695 1.199110 -3.6265641
## 16-062-SVZ-LPS 16-062-SVZ-R848 16-062-SVZ-TNFa
## ENSG00000000003.14 1.41983883 0.1781003 -0.2911888
## ENSG00000000419.12 5.57255094 5.5885742 5.6900115
## ENSG00000000457.14 2.20073869 1.9127926 2.2174572
## ENSG00000000460.17 0.07668224 0.8634440 1.5887410
## ENSG00000000938.13 6.40302460 6.1456025 6.7200385
## ENSG00000000971.15 -1.88596960 -5.3764886 -5.4204718
## 16-062-SVZ-unstim 16-062-THA-IFNy 16-062-THA-LPS
## ENSG00000000003.14 -1.1748063 1.0711917 0.4455398
## ENSG00000000419.12 5.5885570 5.4550722 5.1078016
## ENSG00000000457.14 2.6790080 3.5866920 2.4584836
## ENSG00000000460.17 1.0925933 2.4085824 2.8905863
## ENSG00000000938.13 6.5855357 6.2598057 5.5092345
## ENSG00000000971.15 -0.9337982 0.3144628 -5.8943102
## 16-062-THA-unstim 16-074-GFM-unstim 16-080-SVZ-IFNy
## ENSG00000000003.14 0.6463348 -3.6763115 1.574394
## ENSG00000000419.12 5.5571193 7.2640021 4.293842
## ENSG00000000457.14 3.2246534 -1.3543834 5.010759
## ENSG00000000460.17 2.4705247 -0.8689566 2.472903
## ENSG00000000938.13 6.3126308 7.4523273 5.571282
## ENSG00000000971.15 0.3910777 -3.6763115 2.506664
## 16-080-SVZ-LPS 16-080-SVZ-R848 16-080-SVZ-TNFa
## ENSG00000000003.14 -2.653230 -0.9841828 0.8843216
## ENSG00000000419.12 5.426788 5.4454331 4.8790078
## ENSG00000000457.14 2.941199 3.9132512 3.4487716
## ENSG00000000460.17 1.674744 2.1194827 0.9211869
## ENSG00000000938.13 5.623825 5.1159539 5.2685340
## ENSG00000000971.15 -2.167803 2.1201538 1.5517463
## 16-080-SVZ-unstim 16-082-SVZ-ATP 16-082-SVZ-IFNy
## ENSG00000000003.14 -1.485002 3.244453 -3.7037962
## ENSG00000000419.12 5.620484 5.398024 4.9579819
## ENSG00000000457.14 3.727116 3.848800 1.1531895
## ENSG00000000460.17 3.372787 1.998876 0.9412137
## ENSG00000000938.13 5.589744 5.732119 2.5629903
## ENSG00000000971.15 -2.300056 3.402715 0.2030944
## 16-082-SVZ-LPS 16-082-SVZ-R848 16-082-SVZ-TNFa
## ENSG00000000003.14 1.849790 2.401901 -1.9691167
## ENSG00000000419.12 4.790754 4.996712 6.3519094
## ENSG00000000457.14 3.568291 3.814813 0.8772763
## ENSG00000000460.17 2.283354 1.956776 0.8804823
## ENSG00000000938.13 5.885082 5.764746 2.3671667
## ENSG00000000971.15 1.676458 2.233557 -0.5906051
## 16-082-SVZ-unstim 16-110-GFM-IFNy 16-110-GFM-LPS
## ENSG00000000003.14 0.8109076 3.045835 2.573263
## ENSG00000000419.12 4.0721729 5.853190 5.462787
## ENSG00000000457.14 3.4107854 5.261163 4.178794
## ENSG00000000460.17 2.6527624 2.901053 2.440856
## ENSG00000000938.13 6.3473263 5.367763 5.935319
## ENSG00000000971.15 -0.9546271 4.200163 3.353950
## 16-110-GFM-R848 16-110-GFM-TNFa 16-110-GFM-unstim
## ENSG00000000003.14 3.198472 4.283495 1.343602
## ENSG00000000419.12 6.018455 5.161011 5.637906
## ENSG00000000457.14 3.585495 5.455060 3.902292
## ENSG00000000460.17 1.819960 3.115750 1.137533
## ENSG00000000938.13 5.779731 5.486587 6.225401
## ENSG00000000971.15 2.957464 4.214783 1.767319
## 16-110-GTS-IFNy 16-110-GTS-LPS 16-110-GTS-unstim
## ENSG00000000003.14 2.1115671 1.903363 0.2914856
## ENSG00000000419.12 5.5763420 6.321443 5.6952078
## ENSG00000000457.14 3.4393718 3.033760 4.4407811
## ENSG00000000460.17 1.5412514 0.941837 2.2216973
## ENSG00000000938.13 6.4290720 4.373390 6.2116730
## ENSG00000000971.15 0.8891747 2.960696 2.6761494
## 16-110-SVZ-IFNy 16-110-SVZ-R848 16-110-SVZ-TNFa
## ENSG00000000003.14 1.400766 2.7670860 -0.04161459
## ENSG00000000419.12 5.851619 6.4930326 6.67811646
## ENSG00000000457.14 3.780644 4.2633742 1.60771984
## ENSG00000000460.17 1.859970 0.9320774 -0.33026653
## ENSG00000000938.13 6.963340 6.9005447 6.04348897
## ENSG00000000971.15 1.942719 2.9984115 -0.86330718
## 16-110-SVZ-unstim 16-110-THA-LPS 16-110-THA-unstim
## ENSG00000000003.14 -0.9949658 4.810145 2.859187
## ENSG00000000419.12 5.1366054 4.614225 5.691560
## ENSG00000000457.14 3.0408536 5.480467 4.033685
## ENSG00000000460.17 2.1275229 3.518805 2.983245
## ENSG00000000938.13 7.2650390 5.703230 7.759191
## ENSG00000000971.15 0.4789654 4.715508 2.670742
## 16-112-GFM-IFNy 16-112-GFM-LPS 16-112-GFM-TNFa
## ENSG00000000003.14 2.887899 3.185754 4.098110
## ENSG00000000419.12 5.209827 5.752101 5.707525
## ENSG00000000457.14 4.824673 5.452022 5.320502
## ENSG00000000460.17 2.999740 3.337979 2.513147
## ENSG00000000938.13 5.657286 5.739556 5.580892
## ENSG00000000971.15 3.896182 4.167139 4.907366
## 16-112-GFM-unstim 16-112-GTS-IFNy 16-112-GTS-LPS
## ENSG00000000003.14 2.650927 3.456897 3.482476
## ENSG00000000419.12 5.713539 5.290436 4.995737
## ENSG00000000457.14 4.459345 5.455787 5.116942
## ENSG00000000460.17 2.759370 3.698816 3.589616
## ENSG00000000938.13 6.101872 5.290436 5.278545
## ENSG00000000971.15 3.054282 4.237584 4.482476
## 16-112-GTS-unstim 16-112-SVZ-LPS 16-112-SVZ-unstim
## ENSG00000000003.14 3.588757 0.5650692 0.7694273
## ENSG00000000419.12 5.728687 5.6383182 5.9458614
## ENSG00000000457.14 4.896941 3.7198348 3.5747677
## ENSG00000000460.17 2.933164 1.9119999 2.6956033
## ENSG00000000938.13 5.728687 6.0135297 6.0322869
## ENSG00000000971.15 4.653026 1.4826071 1.9430754
## 16-112-THA-LPS 16-112-THA-unstim 16-117-GFM-DEX
## ENSG00000000003.14 3.520787 3.285104 3.6629977
## ENSG00000000419.12 4.572626 4.800942 5.0166346
## ENSG00000000457.14 5.312373 5.085790 4.3999633
## ENSG00000000460.17 4.251970 4.058360 0.4930727
## ENSG00000000938.13 5.058053 5.173313 6.0476615
## ENSG00000000971.15 3.835660 3.755995 4.1935124
## 16-117-GFM-IFNy 16-117-GFM-LPS 16-117-GFM-R848
## ENSG00000000003.14 -1.7831625 3.449388 2.900125
## ENSG00000000419.12 5.4929619 4.496694 4.307300
## ENSG00000000457.14 2.1183319 5.985441 5.034774
## ENSG00000000460.17 -0.3739074 3.629960 3.234544
## ENSG00000000938.13 4.3746896 4.586892 4.526310
## ENSG00000000971.15 1.0241924 5.771316 5.063064
## 16-117-GFM-TNFa 16-117-GFM-unstim 16-117-GTS-unstim
## ENSG00000000003.14 2.585896 -3.668423 0.8030335
## ENSG00000000419.12 4.475068 5.933348 5.1194020
## ENSG00000000457.14 4.827091 1.911723 3.8734228
## ENSG00000000460.17 3.169503 0.801463 2.4530910
## ENSG00000000938.13 4.744488 4.912778 5.0969472
## ENSG00000000971.15 4.470012 2.353945 3.4052783
## 16-117-SVZ-IFNy 16-117-SVZ-LPS 16-117-SVZ-R848
## ENSG00000000003.14 1.795426 -0.7782792 -0.8216906
## ENSG00000000419.12 4.834106 4.8177143 5.3717228
## ENSG00000000457.14 4.441989 3.5890183 3.0341179
## ENSG00000000460.17 2.663494 1.7533157 0.5638660
## ENSG00000000938.13 5.598293 5.6346805 5.0698170
## ENSG00000000971.15 2.944289 1.7564639 1.0757259
## 16-117-SVZ-unstim 16-117-THA-IFNy 16-117-THA-LPS
## ENSG00000000003.14 5.925086 -0.7788979 -2.4430984
## ENSG00000000419.12 6.662052 6.0946800 5.0939435
## ENSG00000000457.14 4.340124 2.8600322 0.8308243
## ENSG00000000460.17 5.925086 0.3263138 -2.9765306
## ENSG00000000938.13 7.147479 4.9608094 2.5445532
## ENSG00000000971.15 4.340124 2.5928428 1.1605414
## 16-117-THA-unstim 16-118-GFM-IFNy 16-118-GFM-LPS
## ENSG00000000003.14 1.525779 1.730519 2.751409
## ENSG00000000419.12 5.990518 6.162692 5.350447
## ENSG00000000457.14 3.558166 4.984330 6.116311
## ENSG00000000460.17 2.910874 3.393662 4.151304
## ENSG00000000938.13 5.422234 5.026760 4.930733
## ENSG00000000971.15 3.504568 4.085999 5.629731
## 16-118-GFM-R848 16-118-GFM-TNFa 16-118-GFM-unstim
## ENSG00000000003.14 2.624028 2.335609 0.2024886
## ENSG00000000419.12 5.951715 5.309614 5.9676153
## ENSG00000000457.14 3.952711 6.626286 2.8504230
## ENSG00000000460.17 2.474587 1.113217 2.4213890
## ENSG00000000938.13 5.495871 5.309614 5.7332701
## ENSG00000000971.15 2.461298 6.398619 2.2834086
## 16-118-GTS-IFNy 16-118-GTS-LPS 16-118-GTS-unstim
## ENSG00000000003.14 3.581553 3.359506 2.885155
## ENSG00000000419.12 5.970373 5.664851 6.365700
## ENSG00000000457.14 4.632246 4.632808 5.132344
## ENSG00000000460.17 2.387090 2.351238 3.727509
## ENSG00000000938.13 5.230291 5.561140 4.970322
## ENSG00000000971.15 3.888734 4.160960 4.686929
## 16-118-SVZ-IFNy 16-118-SVZ-LPS 16-118-SVZ-R848
## ENSG00000000003.14 -4.251233 1.2124755 0.2074547
## ENSG00000000419.12 5.651143 5.1076606 5.6534658
## ENSG00000000457.14 2.779766 3.8808147 3.8051845
## ENSG00000000460.17 3.185229 2.4201791 2.8373078
## ENSG00000000938.13 5.932403 5.8874702 5.7868405
## ENSG00000000971.15 -4.251233 0.6916433 1.6140519
## 16-118-SVZ-TNFa 16-118-SVZ-unstim 16-137-SVZ-LPS
## ENSG00000000003.14 -1.5172468 0.002744439 1.1827932
## ENSG00000000419.12 5.6054635 5.766510093 5.0712466
## ENSG00000000457.14 3.6953932 3.973720766 3.4660095
## ENSG00000000460.17 2.8568442 3.126851962 1.8685732
## ENSG00000000938.13 6.2479262 5.855742027 5.8858728
## ENSG00000000971.15 0.1526046 2.204378300 0.8779386
## 16-137-SVZ-R848 16-137-SVZ-TNFa 16-137-SVZ-unstim
## ENSG00000000003.14 0.5758902 -2.3447838 1.3862749
## ENSG00000000419.12 6.0759404 5.9816457 4.6941734
## ENSG00000000457.14 1.5625111 0.9104148 3.8623639
## ENSG00000000460.17 0.7733362 -0.9018845 2.9162167
## ENSG00000000938.13 5.3114679 3.3611941 6.7774838
## ENSG00000000971.15 -0.8026214 -1.3936934 0.5195414
## 17-003-GTS-IFNy 17-003-GTS-LPS 17-003-GTS-unstim
## ENSG00000000003.14 1.256304 2.814774 3.721332
## ENSG00000000419.12 6.757288 5.622129 5.763977
## ENSG00000000457.14 3.215847 5.136702 4.848834
## ENSG00000000460.17 1.146850 2.814774 2.585905
## ENSG00000000938.13 5.312251 5.984699 5.818943
## ENSG00000000971.15 2.383061 2.814774 4.435028
## 17-003-SVZ-IFNy 17-003-SVZ-LPS 17-003-SVZ-R848
## ENSG00000000003.14 -1.2622910 -0.4984192 -0.5903746
## ENSG00000000419.12 6.3801218 6.0023121 5.2922685
## ENSG00000000457.14 1.3472749 3.1537231 3.3514829
## ENSG00000000460.17 -0.1668391 0.8960340 1.6212607
## ENSG00000000938.13 3.6193736 5.4573276 5.5013252
## ENSG00000000971.15 -2.7362222 -0.1573822 2.2971507
## 17-003-SVZ-TNFa 17-003-SVZ-unstim 17-003-THA-IFNy
## ENSG00000000003.14 -0.33453643 2.257965 2.639296
## ENSG00000000419.12 6.31874107 5.452818 4.938415
## ENSG00000000457.14 1.24644072 3.778917 5.504633
## ENSG00000000460.17 0.02626374 1.965438 3.496067
## ENSG00000000938.13 3.04110225 5.024331 5.670775
## ENSG00000000971.15 -5.19251743 2.011804 4.409814
## 17-003-THA-LPS 17-003-THA-unstim 17-005-GFM-IFNy
## ENSG00000000003.14 2.419852 1.679505 -2.0869190
## ENSG00000000419.12 5.009713 5.281541 5.6396398
## ENSG00000000457.14 3.951024 3.765424 5.0468090
## ENSG00000000460.17 2.210454 2.540145 2.2613135
## ENSG00000000938.13 4.929264 6.191617 7.2054027
## ENSG00000000971.15 3.691205 1.435086 -0.5019565
## 17-005-GFM-R848 17-005-GFM-TNFa 17-005-GTS-IFNy
## ENSG00000000003.14 -0.6260461 -0.74547664 -0.5400297
## ENSG00000000419.12 5.7713140 5.50579690 5.2106332
## ENSG00000000457.14 2.8852136 4.22618862 4.2414404
## ENSG00000000460.17 1.9326537 2.78603325 1.8187811
## ENSG00000000938.13 7.0739856 7.54670963 7.6312129
## ENSG00000000971.15 -0.8066183 0.02504151 -0.5400297
## 17-005-SVZ-IFNy 17-005-SVZ-LPS 17-005-SVZ-R848
## ENSG00000000003.14 -2.3363535 -2.723393 -0.6709713
## ENSG00000000419.12 5.1807790 5.714474 5.0354872
## ENSG00000000457.14 5.0856501 3.199492 4.0950246
## ENSG00000000460.17 2.7951013 0.861302 2.1470967
## ENSG00000000938.13 7.0380932 6.616704 7.6262440
## ENSG00000000971.15 0.7120095 -2.433887 -1.1070704
## 17-005-SVZ-TNFa 17-005-SVZ-unstim 17-013-GFM-LPS
## ENSG00000000003.14 -2.7740300 -2.055936 -1.2535382
## ENSG00000000419.12 4.8827524 5.164523 5.4607073
## ENSG00000000457.14 3.6492792 3.973900 1.7209911
## ENSG00000000460.17 2.6243204 3.042629 -0.2468213
## ENSG00000000938.13 7.4750835 7.118157 5.7245049
## ENSG00000000971.15 -0.7036407 -5.962827 1.7584345
## 17-013-GFM-unstim 17-013-SVZ-IFNy 17-013-SVZ-LPS
## ENSG00000000003.14 -0.3644495 -1.383550 -1.228698
## ENSG00000000419.12 5.6430450 5.015358 4.316164
## ENSG00000000457.14 3.2617559 3.995121 3.618138
## ENSG00000000460.17 1.7461364 1.788100 2.338693
## ENSG00000000938.13 6.4608273 5.846008 6.274500
## ENSG00000000971.15 2.7351823 -2.762062 -3.891663
## 17-013-SVZ-R848 17-013-SVZ-TNFa 17-013-SVZ-unstim
## ENSG00000000003.14 -0.8898796 -1.440371 -1.964388
## ENSG00000000419.12 5.4485448 5.364405 4.841976
## ENSG00000000457.14 2.9443461 2.978449 2.851739
## ENSG00000000460.17 1.9694539 2.261252 1.841222
## ENSG00000000938.13 6.1954600 5.921280 5.733382
## ENSG00000000971.15 -1.2858083 -2.177337 -1.964388
## 17-017-GFM-IFNy 17-017-GFM-R848 17-017-GFM-TNFa
## ENSG00000000003.14 3.056531 0.4901638 2.523590
## ENSG00000000419.12 5.013092 5.6335106 5.820809
## ENSG00000000457.14 3.994067 2.8838154 4.287202
## ENSG00000000460.17 1.361339 1.7545716 2.189361
## ENSG00000000938.13 5.266645 5.8795340 5.937777
## ENSG00000000971.15 2.031869 -0.1968391 1.187987
## 17-017-GFM-unstim 17-017-GTS-LPS 17-017-GTS-unstim
## ENSG00000000003.14 1.012468 2.6225925 0.3753689
## ENSG00000000419.12 5.155426 0.3006644 4.4963843
## ENSG00000000457.14 2.597430 5.0316062 4.5925996
## ENSG00000000460.17 1.749433 0.5901710 -1.9465592
## ENSG00000000938.13 5.836896 6.5464812 2.3013683
## ENSG00000000971.15 3.675433 3.1968286 3.7258661
## 17-017-SVZ-IFNy 17-017-SVZ-LPS 17-017-SVZ-R848
## ENSG00000000003.14 0.2021086 1.3966012 -0.2563640
## ENSG00000000419.12 5.9190995 5.5056616 5.7660038
## ENSG00000000457.14 3.9534295 3.1446219 2.9610300
## ENSG00000000460.17 2.1025729 0.1986618 2.6175528
## ENSG00000000938.13 6.3106331 6.3194333 6.4048515
## ENSG00000000971.15 1.8498069 1.5374637 -0.5974009
## 17-017-SVZ-TNFa 17-017-SVZ-unstim 17-017-THA-LPS
## ENSG00000000003.14 -1.7135912 -0.4434097 2.023574
## ENSG00000000419.12 5.6477260 5.4333528 3.849545
## ENSG00000000457.14 3.1822654 3.0681595 1.734068
## ENSG00000000460.17 2.2285882 2.2062517 1.734068
## ENSG00000000938.13 6.6964058 6.4678025 3.518339
## ENSG00000000971.15 0.3370349 -2.2799110 4.867923
## 17-021-SVZ-unstim 17-029-GFM-LPS 17-029-GFM-unstim
## ENSG00000000003.14 -2.335187 0.6543372 2.611769
## ENSG00000000419.12 6.056740 6.2089261 5.916823
## ENSG00000000457.14 2.411810 2.9762653 4.259967
## ENSG00000000460.17 1.361414 3.4616921 3.379670
## ENSG00000000938.13 6.226709 5.7836202 5.330162
## ENSG00000000971.15 -4.209656 0.6543372 3.862166
## 17-029-GTS-LPS 17-029-GTS-unstim 17-029-SVZ-IFNy
## ENSG00000000003.14 2.142218 0.267891 2.347599
## ENSG00000000419.12 5.752460 4.174782 5.884573
## ENSG00000000457.14 3.641011 5.694156 3.754519
## ENSG00000000460.17 3.069138 0.267891 2.900286
## ENSG00000000938.13 5.114633 6.534678 5.495991
## ENSG00000000971.15 2.589677 0.267891 1.713727
## 17-029-SVZ-LPS 17-029-SVZ-R848 17-029-SVZ-TNFa
## ENSG00000000003.14 2.606886 -0.3249802 1.714507
## ENSG00000000419.12 6.293560 6.5952851 5.937930
## ENSG00000000457.14 3.766723 3.2109264 4.334437
## ENSG00000000460.17 2.116535 1.9938896 1.674722
## ENSG00000000938.13 4.840684 5.4061392 6.016095
## ENSG00000000971.15 2.603677 0.1677025 2.903541
## 17-029-SVZ-unstim 17-032-GTS-IFNy 17-032-GTS-LPS
## ENSG00000000003.14 0.8599100 -0.006238236 0.4661619
## ENSG00000000419.12 5.7601849 6.310444748 5.3762550
## ENSG00000000457.14 3.6485547 2.847950504 3.9855361
## ENSG00000000460.17 2.8570784 2.015012219 2.1442338
## ENSG00000000938.13 5.6127005 5.898323553 5.5677000
## ENSG00000000971.15 0.4728868 -1.053543951 2.1138602
## 17-032-GTS-unstim 17-032-SVZ-IFNy 17-032-SVZ-LPS
## ENSG00000000003.14 -2.767166 -2.496521 -1.430143
## ENSG00000000419.12 5.999031 5.379996 5.526378
## ENSG00000000457.14 3.250845 3.522736 3.686222
## ENSG00000000460.17 3.139628 3.734988 2.168222
## ENSG00000000938.13 5.646462 6.339530 5.311324
## ENSG00000000971.15 -1.919169 -2.496521 -2.167109
## 17-032-SVZ-R848 17-032-SVZ-TNFa 17-032-SVZ-unstim
## ENSG00000000003.14 -2.229415 -1.6843854 -0.4361429
## ENSG00000000419.12 6.200108 6.1584139 6.1637700
## ENSG00000000457.14 2.608417 3.9016930 3.5275074
## ENSG00000000460.17 1.998292 3.0761397 2.9288297
## ENSG00000000938.13 4.728655 4.9656405 4.3687564
## ENSG00000000971.15 -2.591985 -0.2438128 0.7862495
## 17-032-THA-IFNy 17-032-THA-LPS 17-032-THA-unstim
## ENSG00000000003.14 1.935326 -0.1994465 1.181042
## ENSG00000000419.12 5.687666 5.4907353 5.498154
## ENSG00000000457.14 4.056499 3.6233373 3.920315
## ENSG00000000460.17 2.738356 1.5331084 2.660963
## ENSG00000000938.13 5.677435 5.6728639 6.122775
## ENSG00000000971.15 1.975968 1.8924760 2.318546
## 17-043-GFM-IFNy 17-043-GFM-LPS 17-043-GFM-R848
## ENSG00000000003.14 2.994560 3.842475 3.234063
## ENSG00000000419.12 4.915950 3.190398 4.915241
## ENSG00000000457.14 5.077386 5.518633 5.001937
## ENSG00000000460.17 3.279289 3.158445 3.033722
## ENSG00000000938.13 6.805034 6.405411 5.827293
## ENSG00000000971.15 3.927446 4.155633 4.157441
## 17-043-GFM-TNFa 17-043-GFM-unstim 17-043-GTS-unstim
## ENSG00000000003.14 3.061100 3.467055 1.493286
## ENSG00000000419.12 5.168903 4.083727 4.616668
## ENSG00000000457.14 4.634073 5.012365 4.700286
## ENSG00000000460.17 3.190440 3.004655 3.231899
## ENSG00000000938.13 7.360466 6.615447 5.825482
## ENSG00000000971.15 3.694972 3.467055 3.815214
## 17-043-SVZ-LPS 17-043-SVZ-unstim 17-043-THA-LPS
## ENSG00000000003.14 -5.068749 -1.6312234 2.321430
## ENSG00000000419.12 5.316035 5.9639493 5.092489
## ENSG00000000457.14 2.859029 3.6904424 5.020711
## ENSG00000000460.17 1.745033 2.6103395 2.911402
## ENSG00000000938.13 6.675665 6.3976873 5.792221
## ENSG00000000971.15 -1.898824 -0.3357675 3.728605
## 17-043-THA-unstim 17-074-GFM-LPS 17-074-GFM-unstim
## ENSG00000000003.14 -0.5482713 1.148192 0.3254171
## ENSG00000000419.12 5.8701436 5.613797 5.6688249
## ENSG00000000457.14 3.5790319 3.785894 3.5317130
## ENSG00000000460.17 2.0344453 2.761546 1.4284111
## ENSG00000000938.13 5.8429007 6.516328 6.6226901
## ENSG00000000971.15 0.8302404 2.870823 2.1998862
## 17-074-THA-LPS 17-074-THA-unstim 17-078-GFM-IFNy
## ENSG00000000003.14 1.120093 0.3731417 0.3169119
## ENSG00000000419.12 5.697824 5.9297095 6.8560707
## ENSG00000000457.14 4.101653 3.7992765 3.3304734
## ENSG00000000460.17 3.211488 2.3588771 1.2613539
## ENSG00000000938.13 6.524724 6.5540133 6.6125533
## ENSG00000000971.15 2.410282 2.4742278 0.3169119
## 17-078-GFM-LPS 17-078-GFM-R848 17-078-GFM-TNFa
## ENSG00000000003.14 2.871669 3.148209 2.463610
## ENSG00000000419.12 3.935799 4.638534 5.270965
## ENSG00000000457.14 5.129777 5.495739 5.328680
## ENSG00000000460.17 3.154243 3.715661 2.463610
## ENSG00000000938.13 5.920032 5.935800 6.226110
## ENSG00000000971.15 4.697639 4.182156 4.865708
## 17-078-GFM-unstim 17-078-SVZ-LPS 17-078-SVZ-unstim
## ENSG00000000003.14 3.023624 1.683373 1.595376
## ENSG00000000419.12 5.708122 5.801678 6.050001
## ENSG00000000457.14 5.770858 3.976635 4.255857
## ENSG00000000460.17 3.386194 1.707316 1.807072
## ENSG00000000938.13 4.971157 6.146814 6.112805
## ENSG00000000971.15 5.642534 2.576458 2.577674
## 17-090-SVZ-IFNy 17-094-GFM-IFNy 17-094-GFM-LPS
## ENSG00000000003.14 -0.4785171 0.4423558 -1.7137628
## ENSG00000000419.12 5.1740941 5.4133768 5.5487592
## ENSG00000000457.14 4.5999888 4.6143681 2.8078590
## ENSG00000000460.17 2.5435805 2.5389448 1.2419558
## ENSG00000000938.13 7.2300420 7.8017727 7.1857314
## ENSG00000000971.15 -1.0951884 1.1258822 -0.6496325
## 17-094-GFM-R848 17-094-GFM-TNFa 17-094-GFM-unstim
## ENSG00000000003.14 -0.9373333 0.5267582 -2.1137413
## ENSG00000000419.12 5.3430157 6.0813470 5.4089492
## ENSG00000000457.14 3.7304557 3.1334296 3.5490338
## ENSG00000000460.17 1.9323587 1.1326654 2.3166926
## ENSG00000000938.13 7.6810522 6.6094223 7.5841915
## ENSG00000000971.15 1.2986722 1.6810863 -0.4256854
## 17-094-GTS-LPS 17-094-GTS-unstim 17-094-SVZ-IFNy
## ENSG00000000003.14 1.658086 -1.2814068 -1.28474376
## ENSG00000000419.12 5.460007 6.1420594 5.73677013
## ENSG00000000457.14 4.867950 3.2404815 4.86127849
## ENSG00000000460.17 2.588077 1.4391149 2.57995669
## ENSG00000000938.13 7.126121 7.0249081 7.85264153
## ENSG00000000971.15 3.024869 0.4066492 -0.06489018
## 17-094-SVZ-LPS 17-094-SVZ-R848 17-094-SVZ-TNFa
## ENSG00000000003.14 0.4019425 0.3123056 -4.066829
## ENSG00000000419.12 5.6588812 5.5328567 5.612064
## ENSG00000000457.14 3.2461177 4.2141494 4.024060
## ENSG00000000460.17 1.8475683 2.5652863 2.606633
## ENSG00000000938.13 6.7802889 7.5633934 7.795421
## ENSG00000000971.15 -1.1830200 1.0713599 -1.403864
## 17-094-SVZ-unstim 17-094-THA-IFNy 17-094-THA-LPS
## ENSG00000000003.14 -1.451444 0.2593416 0.2603843
## ENSG00000000419.12 5.476065 4.9499559 5.5422591
## ENSG00000000457.14 3.746979 4.3912410 3.5694773
## ENSG00000000460.17 2.411954 2.5287269 1.7715872
## ENSG00000000938.13 7.772777 7.6481187 6.6874476
## ENSG00000000971.15 -2.103520 1.8997993 0.9124610
## 17-094-THA-unstim 17-097-GFM-IFNy 17-097-GFM-LPS
## ENSG00000000003.14 1.471347 1.314877 0.9627211
## ENSG00000000419.12 5.101825 5.198498 5.7317876
## ENSG00000000457.14 3.788533 4.515005 3.8930169
## ENSG00000000460.17 1.983996 2.263179 1.1982440
## ENSG00000000938.13 7.620052 6.962192 5.4001264
## ENSG00000000971.15 1.241661 2.285731 3.2846492
## 17-097-GFM-R848 17-097-GFM-TNFa 17-097-GFM-unstim
## ENSG00000000003.14 2.576431 1.902217 2.605220
## ENSG00000000419.12 5.495085 5.474333 5.284510
## ENSG00000000457.14 3.563209 4.043483 4.059965
## ENSG00000000460.17 2.030422 2.406378 2.330283
## ENSG00000000938.13 6.624655 6.730252 6.409787
## ENSG00000000971.15 2.674278 1.633030 2.039623
## 17-097-GTS-LPS 17-097-GTS-unstim 17-097-SVZ-IFNy
## ENSG00000000003.14 2.836289 2.594802 0.1051406
## ENSG00000000419.12 5.354138 6.247147 5.5124934
## ENSG00000000457.14 5.048906 3.740880 5.0156431
## ENSG00000000460.17 3.116706 2.496954 3.1625562
## ENSG00000000938.13 6.118325 6.390282 6.2153368
## ENSG00000000971.15 3.149447 2.155917 1.0158733
## 17-097-SVZ-LPS 17-097-SVZ-R848 17-097-SVZ-TNFa
## ENSG00000000003.14 -1.1856684 0.6244666 0.2658351
## ENSG00000000419.12 5.7936306 5.4273984 5.4431623
## ENSG00000000457.14 2.4121081 4.0318582 4.3044534
## ENSG00000000460.17 1.2842175 2.7301447 3.3329129
## ENSG00000000938.13 5.2277106 6.4207380 6.3572215
## ENSG00000000971.15 -0.3124342 0.7046370 0.5553417
## 17-097-SVZ-unstim 17-099-GFM-IFNy 17-099-GFM-LPS
## ENSG00000000003.14 2.298279 2.472324 0.9049124
## ENSG00000000419.12 5.193713 5.369877 4.7728089
## ENSG00000000457.14 4.326009 4.350512 3.6993491
## ENSG00000000460.17 3.079834 3.042944 1.7387336
## ENSG00000000938.13 5.885278 7.152939 6.9847172
## ENSG00000000971.15 2.143556 2.755386 1.5464585
## 17-099-GFM-R848 17-099-GFM-TNFa 17-099-GFM-unstim
## ENSG00000000003.14 1.115393 1.692618 -0.8605731
## ENSG00000000419.12 5.625918 5.473368 5.3791959
## ENSG00000000457.14 3.053646 3.494595 3.2070329
## ENSG00000000460.17 2.521573 2.075253 1.5268945
## ENSG00000000938.13 6.876715 7.254328 7.2387121
## ENSG00000000971.15 1.614964 1.758207 -1.0049630
## 17-099-GTS-IFNy 17-099-GTS-LPS 17-099-GTS-unstim
## ENSG00000000003.14 2.665966 3.372398 1.1656157
## ENSG00000000419.12 5.439133 4.714317 5.6230588
## ENSG00000000457.14 4.628470 4.868569 3.2833108
## ENSG00000000460.17 2.785295 2.789112 2.5933844
## ENSG00000000938.13 7.419101 6.496880 7.5615717
## ENSG00000000971.15 2.516589 3.075416 0.7650778
## 17-099-SVZ-LPS 17-099-SVZ-R848 17-099-SVZ-TNFa
## ENSG00000000003.14 -0.4650181 -3.2005322 -1.40262441
## ENSG00000000419.12 5.2524952 5.2792481 5.89366613
## ENSG00000000457.14 3.1409729 3.4022533 3.24584103
## ENSG00000000460.17 1.3185883 2.2634825 1.84004738
## ENSG00000000938.13 6.6410151 7.0533153 6.53401353
## ENSG00000000971.15 -4.8573355 -0.6980319 0.09214028
## 17-099-SVZ-unstim 17-099-THA-IFNy 17-099-THA-LPS
## ENSG00000000003.14 -1.053779 4.094147 3.390409
## ENSG00000000419.12 5.473397 5.231650 5.037100
## ENSG00000000457.14 3.934521 4.842810 4.681162
## ENSG00000000460.17 3.264594 2.338962 2.659736
## ENSG00000000938.13 7.018508 6.594649 6.858415
## ENSG00000000971.15 -1.946864 2.439643 2.745074
## 17-099-THA-unstim 17-102-GFM-LPS 17-102-GFM-unstim
## ENSG00000000003.14 1.126856 2.149969 -0.1889373
## ENSG00000000419.12 6.144390 6.056860 5.8947767
## ENSG00000000457.14 4.408586 3.683401 4.3859478
## ENSG00000000460.17 2.517858 1.526532 2.5417346
## ENSG00000000938.13 7.244442 6.470631 7.0980960
## ENSG00000000971.15 1.812747 1.808932 0.8528829
## 17-102-GTS-LPS 17-102-GTS-unstim 17-102-SVZ-IFNy
## ENSG00000000003.14 1.782590 1.705988 1.223572
## ENSG00000000419.12 5.689480 5.520864 5.022067
## ENSG00000000457.14 4.223633 4.495539 4.947723
## ENSG00000000460.17 2.488377 3.187892 2.671113
## ENSG00000000938.13 5.475355 6.644205 6.371576
## ENSG00000000971.15 2.350873 1.774701 1.520553
## 17-102-SVZ-LPS 17-102-SVZ-R848 17-102-SVZ-TNFa
## ENSG00000000003.14 0.6082632 -1.0775990 -1.4408252
## ENSG00000000419.12 5.0955290 6.5366778 6.6881143
## ENSG00000000457.14 3.9746753 3.4572097 3.3621263
## ENSG00000000460.17 2.2209864 1.2601961 1.7532619
## ENSG00000000938.13 6.3315097 6.2320780 6.1674913
## ENSG00000000971.15 0.1228363 -0.6414998 -0.7038596
## 17-102-SVZ-unstim 17-102-THA-LPS 17-102-THA-unstim
## ENSG00000000003.14 -0.5740222 0.2653867 2.483660
## ENSG00000000419.12 5.7189760 5.3345488 5.554780
## ENSG00000000457.14 4.3803931 3.6912041 4.041772
## ENSG00000000460.17 2.3710567 1.1330950 2.236500
## ENSG00000000938.13 6.5240099 6.4054252 6.446741
## ENSG00000000971.15 -0.9610453 2.2129193 3.232852
## 17-124-GFM-LPS 17-124-GFM-unstim 17-124-SVZ-IFNy
## ENSG00000000003.14 3.127698 2.570035 -0.6243938
## ENSG00000000419.12 5.544933 5.676535 5.1469385
## ENSG00000000457.14 4.309304 4.533510 5.1271821
## ENSG00000000460.17 2.293708 2.664598 2.4145774
## ENSG00000000938.13 6.446103 6.537680 7.3150455
## ENSG00000000971.15 3.747426 4.091573 0.0276829
## 17-124-SVZ-LPS 17-124-SVZ-R848 17-124-SVZ-TNFa
## ENSG00000000003.14 0.2406358 -0.5683289 0.1530736
## ENSG00000000419.12 5.2420013 5.3440999 5.5770226
## ENSG00000000457.14 3.6892965 4.3885141 4.1392648
## ENSG00000000460.17 2.1700825 2.0578406 2.4692193
## ENSG00000000938.13 6.3041126 6.7515169 7.0793184
## ENSG00000000971.15 -0.1599022 1.2230845 0.5045459
## 17-124-SVZ-unstim 17-124-THA-IFNy 17-124-THA-LPS
## ENSG00000000003.14 0.2252018 1.823803 0.7717708
## ENSG00000000419.12 5.3106427 4.631158 5.4198953
## ENSG00000000457.14 3.9853721 4.806741 3.5614614
## ENSG00000000460.17 2.1082640 1.917400 0.4296648
## ENSG00000000938.13 6.8434125 6.832308 6.3973444
## ENSG00000000971.15 1.3874733 2.545087 1.4431481
## 17-124-THA-unstim 17-136-GFM-IFNy 17-136-GFM-LPS
## ENSG00000000003.14 1.274962 1.841499 2.111322
## ENSG00000000419.12 5.688496 5.681373 5.274336
## ENSG00000000457.14 3.885347 4.298809 2.769675
## ENSG00000000460.17 1.835786 1.868262 1.915927
## ENSG00000000938.13 6.844480 6.239652 5.595918
## ENSG00000000971.15 1.274962 2.083924 1.076784
## 17-136-GFM-R848 17-136-GFM-TNFa 17-136-GFM-unstim
## ENSG00000000003.14 2.925470 2.922017 2.660051
## ENSG00000000419.12 5.355236 5.846990 5.295137
## ENSG00000000457.14 3.498902 4.449980 4.137336
## ENSG00000000460.17 1.053152 2.680654 3.262972
## ENSG00000000938.13 5.650543 4.872435 5.729399
## ENSG00000000971.15 2.068834 3.689843 3.343578
## 17-136-SVZ-LPS 17-136-SVZ-unstim 17-148-GTS-LPS
## ENSG00000000003.14 1.4530232 0.5570602 2.081373
## ENSG00000000419.12 5.3371039 6.7263778 4.307882
## ENSG00000000457.14 3.0258654 2.2533238 4.323335
## ENSG00000000460.17 1.8739890 2.1428968 2.596985
## ENSG00000000938.13 5.7039254 4.3737529 5.592335
## ENSG00000000971.15 0.3041598 0.9701290 3.399140
## 17-148-GTS-unstim 17-148-SVZ-LPS 17-148-SVZ-unstim
## ENSG00000000003.14 3.227974 0.07106024 -0.1934722
## ENSG00000000419.12 1.112497 5.17848382 5.3368918
## ENSG00000000457.14 6.434665 3.82740938 3.7218409
## ENSG00000000460.17 4.774702 2.47504547 2.1530840
## ENSG00000000938.13 4.656817 6.09809320 6.1633147
## ENSG00000000971.15 5.308894 1.70577578 -0.1723015
## 18-010-GFM-LPS 18-010-GFM-unstim 18-010-GTS-IFNy
## ENSG00000000003.14 -0.9406479 2.534302 -0.1143839
## ENSG00000000419.12 5.1867603 5.193558 6.3241307
## ENSG00000000457.14 4.0435271 3.933506 4.0510457
## ENSG00000000460.17 2.6625603 2.757498 1.3306364
## ENSG00000000938.13 6.0335059 5.852707 5.6458370
## ENSG00000000971.15 1.0415367 3.353072 1.9094628
## 18-010-GTS-LPS 18-010-GTS-unstim 18-010-SVZ-IFNy
## ENSG00000000003.14 1.959329 0.6725134 -1.1296825
## ENSG00000000419.12 5.835522 5.6342368 5.4058216
## ENSG00000000457.14 4.794615 3.2666746 4.7077859
## ENSG00000000460.17 3.047685 1.6309799 1.7592183
## ENSG00000000938.13 4.766684 5.9173593 7.0977211
## ENSG00000000971.15 3.061898 1.8234243 -0.4622578
## 18-010-SVZ-LPS 18-010-SVZ-R848 18-010-SVZ-TNFa
## ENSG00000000003.14 -1.00958346 -0.6660682 -0.4805160
## ENSG00000000419.12 5.17719744 5.1614835 5.0996930
## ENSG00000000457.14 4.13834938 4.2214058 4.2183458
## ENSG00000000460.17 2.77443723 2.6681086 3.0823851
## ENSG00000000938.13 6.90238461 6.9263889 7.0235189
## ENSG00000000971.15 -0.06616699 -0.6660682 0.2257528
## 18-010-SVZ-unstim 18-010-THA-IFNy 18-010-THA-LPS
## ENSG00000000003.14 -2.487099 2.118702 -0.1980718
## ENSG00000000419.12 4.965943 5.382214 5.4244682
## ENSG00000000457.14 3.476118 4.932455 4.0261744
## ENSG00000000460.17 2.276667 2.617804 2.2104590
## ENSG00000000938.13 6.438703 6.846191 7.1411844
## ENSG00000000971.15 -1.264707 2.530301 0.9315410
## 18-010-THA-unstim 18-018-GFM-ATP 18-018-GFM-DEX
## ENSG00000000003.14 0.7590940 -3.627939 -5.269055
## ENSG00000000419.12 5.5912607 5.931629 5.471569
## ENSG00000000457.14 2.9025807 3.260999 3.275755
## ENSG00000000460.17 0.9999752 2.490670 3.248772
## ENSG00000000938.13 6.2044045 7.707340 8.308964
## ENSG00000000971.15 1.7383354 -3.627939 -1.021127
## 18-018-GFM-IFNy 18-018-GFM-TNFa 18-018-GFM-unstim
## ENSG00000000003.14 1.877146 1.110743 -2.834601
## ENSG00000000419.12 5.499078 6.102948 5.448024
## ENSG00000000457.14 4.293011 3.170193 3.542801
## ENSG00000000460.17 2.568168 1.386983 2.974402
## ENSG00000000938.13 7.183021 6.035760 7.423965
## ENSG00000000971.15 2.485568 3.147579 -5.156529
## 18-018-SVZ-IFNy 18-018-SVZ-LPS 18-018-SVZ-TNFa
## ENSG00000000003.14 0.8181985 2.805453 -1.7693096
## ENSG00000000419.12 5.7856307 4.937903 6.0415092
## ENSG00000000457.14 4.1761124 4.310301 3.4250685
## ENSG00000000460.17 2.2611989 2.957012 2.0701849
## ENSG00000000938.13 6.8278272 6.330622 5.3303417
## ENSG00000000971.15 1.1151803 3.247971 0.5075306
## 18-018-SVZ-unstim 18-018-THA-unstim 18-0198-GFM-LPS
## ENSG00000000003.14 -0.1155898 -4.0917429 4.935600
## ENSG00000000419.12 4.9404156 5.3380125 5.148844
## ENSG00000000457.14 4.2266805 3.7139794 4.436989
## ENSG00000000460.17 3.1246227 3.0807179 2.117224
## ENSG00000000938.13 6.8609266 7.3510278 6.339423
## ENSG00000000971.15 1.1068026 -0.9218179 2.759277
## 18-021-GFM-DEX 18-021-GFM-LPS 18-021-GFM-unstim
## ENSG00000000003.14 0.2798556 3.39152826 -5.134946
## ENSG00000000419.12 4.8034175 4.97649076 4.916263
## ENSG00000000457.14 5.4625479 4.18002415 2.726265
## ENSG00000000460.17 2.1595613 1.51705914 2.603011
## ENSG00000000938.13 6.9663561 7.24497959 8.263130
## ENSG00000000971.15 0.2798556 -0.06790336 -1.675514
## 18-021-GTS-LPS 18-021-GTS-unstim 18-021-THA-LPS
## ENSG00000000003.14 -3.696085 5.631352 -0.3145233
## ENSG00000000419.12 4.846947 5.017243 4.2090386
## ENSG00000000457.14 3.055772 5.074958 3.3859164
## ENSG00000000460.17 1.560423 3.650461 4.2090386
## ENSG00000000938.13 7.837731 6.222712 6.6967039
## ENSG00000000971.15 -0.888730 3.309424 5.6162140
## 18-021-THA-unstim 18-039-SVZ-IFNy 18-039-SVZ-R848
## ENSG00000000003.14 -5.547177 2.150925 -0.8393922
## ENSG00000000419.12 5.351424 5.869250 5.8712645
## ENSG00000000457.14 3.723305 4.723225 3.2916819
## ENSG00000000460.17 3.503814 3.225764 1.7765972
## ENSG00000000938.13 7.130322 6.962452 7.1745069
## ENSG00000000971.15 -5.547177 3.078976 -0.9706367
## 18-039-SVZ-TNFa 18-064-GFM-ATP 18-064-GFM-DEX
## ENSG00000000003.14 1.3720863 0.3705517 -4.56513183
## ENSG00000000419.12 5.9235395 5.4998347 4.54077667
## ENSG00000000457.14 3.4911375 6.2079904 2.53290025
## ENSG00000000460.17 2.5536108 5.5729694 0.07872436
## ENSG00000000938.13 6.8924444 6.5603762 8.37903115
## ENSG00000000971.15 0.4012326 0.3705517 -4.56513183
## 18-064-GFM-IFNy 18-064-GFM-IL4 18-064-GFM-LPS
## ENSG00000000003.14 4.253719 -3.422733 -4.120813
## ENSG00000000419.12 6.575647 5.398510 4.641846
## ENSG00000000457.14 4.253719 3.620641 3.378023
## ENSG00000000460.17 4.253719 2.814270 2.613535
## ENSG00000000938.13 7.061074 7.602176 6.266127
## ENSG00000000971.15 4.253719 -3.422733 -3.383847
## 18-064-GFM-TNFa 18-064-GFM-unstim 18-064-GTS-LPS
## ENSG00000000003.14 -3.9572043 1.9803340 -5.2513680
## ENSG00000000419.12 5.9153851 5.5246545 4.0951457
## ENSG00000000457.14 0.9591662 3.5652965 2.7802919
## ENSG00000000460.17 0.2501680 0.3953715 0.9643106
## ENSG00000000938.13 6.4691770 7.7262884 6.4320653
## ENSG00000000971.15 -1.9176759 1.9803340 -5.2513680
## 18-064-GTS-unstim 18-064-THA-LPS 18-064-THA-unstim
## ENSG00000000003.14 -2.182600 -5.3444860 -5.546459
## ENSG00000000419.12 3.883489 4.2830478 4.589250
## ENSG00000000457.14 3.073332 3.2314313 3.569885
## ENSG00000000460.17 3.378639 1.8492857 2.425085
## ENSG00000000938.13 7.194610 6.9435149 7.415895
## ENSG00000000971.15 -4.989955 -0.5319878 -1.846019
## 18-074-GTS-LPS 18-074-GTS-unstim 18-074-SVZ-IFNy
## ENSG00000000003.14 1.736793 3.102584 1.570010
## ENSG00000000419.12 5.592930 6.093687 5.903526
## ENSG00000000457.14 4.151430 4.537469 4.116138
## ENSG00000000460.17 2.937032 3.440131 2.395598
## ENSG00000000938.13 5.867602 6.185867 6.691293
## ENSG00000000971.15 2.912643 3.304423 1.777701
## 18-074-SVZ-LPS 18-074-SVZ-R848 18-074-SVZ-TNFa
## ENSG00000000003.14 -0.06027287 1.7234062 2.591347
## ENSG00000000419.12 5.51288033 5.9022093 5.608261
## ENSG00000000457.14 3.96259666 3.4917670 3.816226
## ENSG00000000460.17 1.90994058 2.6358431 3.151047
## ENSG00000000938.13 6.96064670 6.8708938 6.867647
## ENSG00000000971.15 -0.49637199 0.4794806 2.397613
## 18-074-SVZ-unstim 18-079-GFM-LPS 18-079-GFM-unstim
## ENSG00000000003.14 1.543155 -4.8385323 -4.3356113
## ENSG00000000419.12 5.689621 3.9848349 5.2208947
## ENSG00000000457.14 4.256567 0.0194487 1.2281570
## ENSG00000000460.17 2.992908 1.5708586 -0.1866772
## ENSG00000000938.13 6.696176 6.8219094 4.5067390
## ENSG00000000971.15 2.203668 -4.8385323 0.7779225
## 18-079-SVZ-IFNy 18-079-SVZ-LPS 18-079-SVZ-R848
## ENSG00000000003.14 -0.729208736 1.407764 -2.9389828
## ENSG00000000419.12 5.069533056 4.183057 4.4214985
## ENSG00000000457.14 3.677781369 2.856258 3.4715392
## ENSG00000000460.17 1.645227998 3.440317 2.5072734
## ENSG00000000938.13 7.168435071 7.438077 7.2355268
## ENSG00000000971.15 0.007756858 -3.877639 0.1199109
## 18-079-SVZ-TNFa 18-105-GFM-DEX 18-105-GFM-LPS
## ENSG00000000003.14 -2.095096 0.3214363 -1.4022226
## ENSG00000000419.12 5.317121 4.8953153 5.4328989
## ENSG00000000457.14 3.771317 3.9305833 3.6404732
## ENSG00000000460.17 1.760229 2.4620146 0.2012902
## ENSG00000000938.13 7.371830 8.9244570 7.8438892
## ENSG00000000971.15 1.074829 -3.7083111 -3.1677574
## 18-105-GFM-unstim 18-105-GTS-LPS 18-105-GTS-unstim
## ENSG00000000003.14 -4.047389 0.9098435 0.7367619
## ENSG00000000419.12 5.488534 3.7171984 4.8242248
## ENSG00000000457.14 3.157703 3.2317716 5.4916495
## ENSG00000000460.17 2.294478 0.9098435 0.7367619
## ENSG00000000938.13 7.911767 5.4334055 6.8452864
## ENSG00000000971.15 -2.462427 0.9098435 0.7367619
## 18-105-THA-LPS 18-105-THA-unstim 18-112-GFM-ATP
## ENSG00000000003.14 -2.830266 -2.174513 -6.152824
## ENSG00000000419.12 4.909852 5.279232 5.760440
## ENSG00000000457.14 3.549424 3.891278 3.232823
## ENSG00000000460.17 1.750603 3.041464 2.638795
## ENSG00000000938.13 7.004205 6.968772 7.759785
## ENSG00000000971.15 -1.064731 -1.231097 -1.629262
## 18-112-GFM-DEX 18-112-GFM-IFNy 18-112-GFM-LPS
## ENSG00000000003.14 -3.887114 -4.007834 -1.8198123
## ENSG00000000419.12 5.290305 5.182814 5.3556679
## ENSG00000000457.14 4.047166 3.901579 3.5272233
## ENSG00000000460.17 2.540269 2.498586 1.4644385
## ENSG00000000938.13 8.721372 7.874427 7.8182213
## ENSG00000000971.15 -3.887114 -5.592796 -0.5974199
## 18-112-GFM-unstim 18-112-GTS-LPS 18-112-GTS-unstim
## ENSG00000000003.14 -1.213110 -4.925151 0.9812786
## ENSG00000000419.12 5.493262 3.984742 4.0085287
## ENSG00000000457.14 4.134859 3.392262 3.1700979
## ENSG00000000460.17 2.692406 1.789095 1.6064302
## ENSG00000000938.13 7.690198 8.266679 7.8952836
## ENSG00000000971.15 -5.605428 -4.925151 -4.9013644
## 18-118-GFM-IL4 MG-01-RNA MG-02-RNA MG-02-SVZ-RNA
## ENSG00000000003.14 -0.3497012 -5.444794 -3.882750 1.133597
## ENSG00000000419.12 6.3085103 4.770739 5.559503 3.741778
## ENSG00000000457.14 3.7377617 3.203169 3.436772 3.829315
## ENSG00000000460.17 1.2352613 3.390815 3.573399 1.788340
## ENSG00000000938.13 5.3227242 8.116614 8.908888 9.473171
## ENSG00000000971.15 3.1097304 1.921529 1.102143 2.584881
## MG-03-MGF-RNA MG-03-RNA MG-04-SVZ-RNA MG-05-MGF-RNA
## ENSG00000000003.14 1.0633670 -1.684371 -4.434592 -0.9414922
## ENSG00000000419.12 3.7001685 5.071730 3.286507 3.8315263
## ENSG00000000457.14 1.2949793 3.251431 2.953770 3.4271399
## ENSG00000000460.17 -0.3068641 3.315574 2.032361 2.2285110
## ENSG00000000938.13 6.0333677 8.973976 8.415009 9.6204011
## ENSG00000000971.15 -1.1242600 1.027324 -1.627237 0.7989879
## MG-07-SVZ-RNA MG-08-CER-RNA MG-09-SVZ-RNA MG-12-CER-RNA
## ENSG00000000003.14 2.560521 -1.9328796 1.219647 -1.301719
## ENSG00000000419.12 4.182613 2.0915046 3.664432 4.243394
## ENSG00000000457.14 1.825971 0.2312045 3.287575 3.640760
## ENSG00000000460.17 1.255021 -1.9727723 2.788970 2.569670
## ENSG00000000938.13 6.422664 6.3828875 8.288259 8.909514
## ENSG00000000971.15 -2.601367 -3.8073487 -2.312848 2.432470
## MG-12-MGF-RNA MG-12-SVZ-RNA MG-13-CER-RNA MG-14-CER-RNA
## ENSG00000000003.14 1.795203 -0.09444444 1.087928 -1.67151635
## ENSG00000000419.12 4.889179 4.41511065 4.510365 4.82403123
## ENSG00000000457.14 4.558233 4.28242215 1.515602 3.64105947
## ENSG00000000460.17 3.281422 4.17036997 2.010463 2.35160249
## ENSG00000000938.13 8.053316 7.79565091 7.602130 8.37193163
## ENSG00000000971.15 4.102258 -2.52740385 2.060272 -0.08655385
## MG-14-MGF-RNA MG-15-CER-RNA MG-15-MGF-RNA MG-15-SN-RNA
## ENSG00000000003.14 -2.6031116 -5.625067 -5.927748 1.255564
## ENSG00000000419.12 4.5567598 3.712555 4.857705 4.062919
## ENSG00000000457.14 3.6711501 2.825732 1.290840 2.840527
## ENSG00000000460.17 2.8942271 1.785172 3.392060 3.577492
## ENSG00000000938.13 8.4503295 8.938308 7.585610 6.810153
## ENSG00000000971.15 0.4721765 -5.625067 -3.605820 5.343027
## MG-15-SVZ-RNA MG-16-CER-RNA MG-16-MGF-RNA MG-17-HIP-RNA
## ENSG00000000003.14 -4.305009 -1.1327001 0.04650904 1.877853
## ENSG00000000419.12 -1.135084 2.3420794 4.29443655 4.897196
## ENSG00000000457.14 -2.720046 1.6987003 4.86612857 1.837745
## ENSG00000000460.17 -2.720046 -5.2201630 3.36141269 2.530558
## ENSG00000000938.13 2.989612 0.5077575 6.44616844 3.964918
## ENSG00000000971.15 -2.720046 -5.2201630 1.08045637 -2.397425
## MG-17-MGF-RNA MG-17-SN-RNA MG-17-SVZ-RNA MG-18-HIP-RNA
## ENSG00000000003.14 2.2553655 -3.525890 2.189478 -1.624407
## ENSG00000000419.12 4.7126455 3.840432 4.086757 3.761024
## ENSG00000000457.14 4.3871241 3.982803 3.915458 4.520265
## ENSG00000000460.17 3.7283504 4.400228 4.772216 4.816036
## ENSG00000000938.13 8.8107090 6.483939 6.021662 6.286885
## ENSG00000000971.15 0.9294903 -5.110852 -5.782066 -2.071866
## MG-18-SN-RNA MG-18-SVZ-RNA MG-19-HIP-RNA MG-19-MGF-RNA
## ENSG00000000003.14 -1.789831 -1.120839 -1.112077 -2.426758
## ENSG00000000419.12 3.947954 3.993822 4.396774 4.859965
## ENSG00000000457.14 3.915996 3.900536 3.887502 4.365391
## ENSG00000000460.17 3.889930 4.478023 3.958713 4.399536
## ENSG00000000938.13 6.370498 5.919047 6.154085 5.903519
## ENSG00000000971.15 -2.927335 -5.208302 -2.211613 -1.774681
## MG-19-SN-RNA MG-20-GFM-RNA MG-20-MGF-RNA MG-20-SN-RNA
## ENSG00000000003.14 -0.7069354 2.136036 -2.025697 -6.4155339
## ENSG00000000419.12 4.8350051 4.274293 4.364711 4.9535181
## ENSG00000000457.14 4.0807328 4.141828 3.821911 0.5783668
## ENSG00000000460.17 3.8483144 3.205636 3.853519 0.2360919
## ENSG00000000938.13 7.0347044 7.833603 6.835390 5.5777583
## ENSG00000000971.15 -5.9923376 2.322449 -5.195622 1.6533518
## MG-21-MGF-RNA MG-22-HIP-RNA MG-22-MGF-RNA MG-22-SN-RNA
## ENSG00000000003.14 -0.4229107 0.07132644 -5.65949773 -5.951899
## ENSG00000000419.12 4.5269499 3.88502846 4.14301863 4.253894
## ENSG00000000457.14 4.0537121 3.78692157 4.66276846 2.111064
## ENSG00000000460.17 3.2714771 3.95774411 4.92354742 3.110363
## ENSG00000000938.13 9.1578956 5.75002437 6.56299532 3.690152
## ENSG00000000971.15 -2.6792505 -1.13924055 -0.04478789 -5.951899
## MG-23-HIP-RNA MG-23-MGF-RNA MG-23-SN-RNA MG-24-HIP-RNA
## ENSG00000000003.14 1.482659 -5.2252485 -6.330746 -0.5052229
## ENSG00000000419.12 3.540535 4.1079069 4.096567 2.7782311
## ENSG00000000457.14 3.873737 4.3208743 1.046898 0.2268749
## ENSG00000000460.17 3.043854 3.4128253 1.656234 -2.0660897
## ENSG00000000938.13 6.604238 8.2350794 5.178534 6.2699109
## ENSG00000000971.15 -5.565374 -0.5813923 -6.330746 -4.7531504
## MG-24-MGF-RNA MG-24-SN-RNA MG-25-HIP-RNA MG-25-MGF-RNA
## ENSG00000000003.14 -6.643034 -5.708108 -5.619631 -3.849725
## ENSG00000000419.12 3.366795 4.770662 4.043927 3.893988
## ENSG00000000457.14 -5.058071 2.749109 4.013764 4.190949
## ENSG00000000460.17 -6.643034 1.804119 3.483080 4.077145
## ENSG00000000938.13 3.253299 6.594245 6.591345 9.151860
## ENSG00000000971.15 -6.643034 -5.708108 -5.619631 -3.112759
## MG-26-DLPFC-RNA MG-26-OCC-CORTEX-RNA MG-26-SN-RNA
## ENSG00000000003.14 -4.8895973 -5.352755 -5.165192
## ENSG00000000419.12 4.7560611 4.413773 3.848828
## ENSG00000000457.14 3.3903382 2.682868 3.250296
## ENSG00000000460.17 0.2470863 3.690545 4.050486
## ENSG00000000938.13 7.1331173 8.867850 6.895841
## ENSG00000000971.15 -4.8895973 -5.352755 -3.580230## [1] TRUERemoval of samples that did not meet criteria QC: 496 samples in total
# summary of the PCA; up to
## Importance of components:
## PC1 PC2 PC3 PC4 PC5 PC6
## Standard deviation 82.9795 43.4155 38.72416 28.43479 25.06897 21.89329
## Proportion of Variance 0.3697 0.1012 0.08051 0.04341 0.03374 0.02574
## Cumulative Proportion 0.3697 0.4709 0.55141 0.59482 0.62857 0.65430
## PC7 PC8 PC9 PC10 PC11 PC12
## Standard deviation 17.91296 16.86858 14.93215 13.83319 12.60483 11.74909
## Proportion of Variance 0.01723 0.01528 0.01197 0.01027 0.00853 0.00741
## Cumulative Proportion 0.67153 0.68681 0.69878 0.70905 0.71758 0.72500
## PC13 PC14 PC15 PC16 PC17 PC18
## Standard deviation 11.38956 10.89235 10.45967 9.72085 9.42511 9.21285
## Proportion of Variance 0.00696 0.00637 0.00587 0.00507 0.00477 0.00456
## Cumulative Proportion 0.73196 0.73833 0.74420 0.74928 0.75405 0.75860
## PC19 PC20 PC21 PC22 PC23 PC24 PC25
## Standard deviation 9.19104 8.7402 8.46646 8.34265 8.26467 8.16908 7.94783
## Proportion of Variance 0.00454 0.0041 0.00385 0.00374 0.00367 0.00358 0.00339
## Cumulative Proportion 0.76314 0.7672 0.77109 0.77483 0.77850 0.78208 0.78547
## PC26 PC27 PC28 PC29 PC30 PC31 PC32
## Standard deviation 7.90979 7.72842 7.6005 7.53782 7.44804 7.36159 7.27359
## Proportion of Variance 0.00336 0.00321 0.0031 0.00305 0.00298 0.00291 0.00284
## Cumulative Proportion 0.78883 0.79204 0.7951 0.79819 0.80117 0.80408 0.80692
## PC33 PC34 PC35 PC36 PC37 PC38 PC39
## Standard deviation 7.2162 7.08461 7.01060 6.90408 6.75989 6.72682 6.61557
## Proportion of Variance 0.0028 0.00269 0.00264 0.00256 0.00245 0.00243 0.00235
## Cumulative Proportion 0.8097 0.81241 0.81505 0.81761 0.82006 0.82249 0.82484
## PC40 PC41 PC42 PC43 PC44 PC45 PC46
## Standard deviation 6.51989 6.44997 6.43496 6.2476 6.09336 6.03941 5.97528
## Proportion of Variance 0.00228 0.00223 0.00222 0.0021 0.00199 0.00196 0.00192
## Cumulative Proportion 0.82712 0.82935 0.83158 0.8337 0.83567 0.83763 0.83954
## PC47 PC48 PC49 PC50 PC51 PC52 PC53
## Standard deviation 5.9513 5.74025 5.68238 5.6290 5.56194 5.4536 5.42128
## Proportion of Variance 0.0019 0.00177 0.00173 0.0017 0.00166 0.0016 0.00158
## Cumulative Proportion 0.8414 0.84321 0.84495 0.8467 0.84831 0.8499 0.85148
## PC54 PC55 PC56 PC57 PC58 PC59 PC60
## Standard deviation 5.33532 5.26240 5.25372 5.17929 5.14110 5.07394 5.04722
## Proportion of Variance 0.00153 0.00149 0.00148 0.00144 0.00142 0.00138 0.00137
## Cumulative Proportion 0.85301 0.85450 0.85598 0.85742 0.85884 0.86022 0.86159
## PC61 PC62 PC63 PC64 PC65 PC66 PC67
## Standard deviation 5.01029 4.97609 4.9141 4.89457 4.87622 4.83265 4.75208
## Proportion of Variance 0.00135 0.00133 0.0013 0.00129 0.00128 0.00125 0.00121
## Cumulative Proportion 0.86294 0.86427 0.8656 0.86685 0.86813 0.86938 0.87059
## PC68 PC69 PC70 PC71 PC72 PC73 PC74
## Standard deviation 4.67624 4.66878 4.61963 4.59842 4.55863 4.54007 4.48871
## Proportion of Variance 0.00117 0.00117 0.00115 0.00114 0.00112 0.00111 0.00108
## Cumulative Proportion 0.87177 0.87294 0.87408 0.87522 0.87633 0.87744 0.87852
## PC75 PC76 PC77 PC78 PC79 PC80 PC81
## Standard deviation 4.47242 4.37200 4.35527 4.32779 4.28948 4.23010 4.20585
## Proportion of Variance 0.00107 0.00103 0.00102 0.00101 0.00099 0.00096 0.00095
## Cumulative Proportion 0.87960 0.88062 0.88164 0.88265 0.88364 0.88460 0.88555
## PC82 PC83 PC84 PC85 PC86 PC87 PC88
## Standard deviation 4.14588 4.12528 4.11290 4.07955 4.04557 4.02910 4.00645
## Proportion of Variance 0.00092 0.00091 0.00091 0.00089 0.00088 0.00087 0.00086
## Cumulative Proportion 0.88647 0.88738 0.88829 0.88918 0.89006 0.89093 0.89180
## PC89 PC90 PC91 PC92 PC93 PC94 PC95
## Standard deviation 3.97608 3.97073 3.96299 3.93906 3.90231 3.8636 3.8513
## Proportion of Variance 0.00085 0.00085 0.00084 0.00083 0.00082 0.0008 0.0008
## Cumulative Proportion 0.89265 0.89349 0.89434 0.89517 0.89599 0.8968 0.8976
## PC96 PC97 PC98 PC99 PC100 PC101 PC102
## Standard deviation 3.82108 3.80595 3.80100 3.76142 3.73379 3.72571 3.70036
## Proportion of Variance 0.00078 0.00078 0.00078 0.00076 0.00075 0.00075 0.00074
## Cumulative Proportion 0.89837 0.89915 0.89992 0.90068 0.90143 0.90217 0.90291
## PC103 PC104 PC105 PC106 PC107 PC108 PC109
## Standard deviation 3.67186 3.64649 3.63598 3.6087 3.57576 3.56146 3.54296
## Proportion of Variance 0.00072 0.00071 0.00071 0.0007 0.00069 0.00068 0.00067
## Cumulative Proportion 0.90363 0.90435 0.90506 0.9058 0.90644 0.90712 0.90780
## PC110 PC111 PC112 PC113 PC114 PC115 PC116
## Standard deviation 3.53123 3.49244 3.48521 3.45541 3.44831 3.41202 3.39692
## Proportion of Variance 0.00067 0.00065 0.00065 0.00064 0.00064 0.00063 0.00062
## Cumulative Proportion 0.90847 0.90912 0.90977 0.91042 0.91105 0.91168 0.91230
## PC117 PC118 PC119 PC120 PC121 PC122 PC123
## Standard deviation 3.38745 3.37088 3.3555 3.32813 3.30836 3.30291 3.27969
## Proportion of Variance 0.00062 0.00061 0.0006 0.00059 0.00059 0.00059 0.00058
## Cumulative Proportion 0.91291 0.91352 0.9141 0.91472 0.91531 0.91590 0.91648
## PC124 PC125 PC126 PC127 PC128 PC129 PC130
## Standard deviation 3.27456 3.25778 3.24072 3.22912 3.20417 3.20187 3.16144
## Proportion of Variance 0.00058 0.00057 0.00056 0.00056 0.00055 0.00055 0.00054
## Cumulative Proportion 0.91705 0.91762 0.91818 0.91874 0.91930 0.91985 0.92038
## PC131 PC132 PC133 PC134 PC135 PC136 PC137
## Standard deviation 3.14879 3.13372 3.11729 3.10956 3.07677 3.07374 3.0650
## Proportion of Variance 0.00053 0.00053 0.00052 0.00052 0.00051 0.00051 0.0005
## Cumulative Proportion 0.92092 0.92144 0.92196 0.92248 0.92299 0.92350 0.9240
## PC138 PC139 PC140 PC141 PC142 PC143 PC144
## Standard deviation 3.0397 3.01755 3.01322 3.00136 2.99237 2.98335 2.97064
## Proportion of Variance 0.0005 0.00049 0.00049 0.00048 0.00048 0.00048 0.00047
## Cumulative Proportion 0.9245 0.92499 0.92548 0.92596 0.92644 0.92692 0.92739
## PC145 PC146 PC147 PC148 PC149 PC150 PC151
## Standard deviation 2.94901 2.94716 2.93401 2.91689 2.91370 2.90851 2.90106
## Proportion of Variance 0.00047 0.00047 0.00046 0.00046 0.00046 0.00045 0.00045
## Cumulative Proportion 0.92786 0.92832 0.92879 0.92924 0.92970 0.93015 0.93061
## PC152 PC153 PC154 PC155 PC156 PC157 PC158
## Standard deviation 2.87181 2.85991 2.85792 2.84997 2.84659 2.84060 2.81328
## Proportion of Variance 0.00044 0.00044 0.00044 0.00044 0.00044 0.00043 0.00042
## Cumulative Proportion 0.93105 0.93149 0.93193 0.93236 0.93280 0.93323 0.93366
## PC159 PC160 PC161 PC162 PC163 PC164 PC165
## Standard deviation 2.80252 2.79572 2.78412 2.77345 2.76616 2.75344 2.74847
## Proportion of Variance 0.00042 0.00042 0.00042 0.00041 0.00041 0.00041 0.00041
## Cumulative Proportion 0.93408 0.93450 0.93491 0.93533 0.93574 0.93614 0.93655
## PC166 PC167 PC168 PC169 PC170 PC171 PC172
## Standard deviation 2.7392 2.7274 2.71153 2.69656 2.69248 2.67855 2.66295
## Proportion of Variance 0.0004 0.0004 0.00039 0.00039 0.00039 0.00039 0.00038
## Cumulative Proportion 0.9369 0.9374 0.93775 0.93814 0.93853 0.93891 0.93929
## PC173 PC174 PC175 PC176 PC177 PC178 PC179
## Standard deviation 2.65652 2.64882 2.64763 2.64141 2.63950 2.62242 2.61811
## Proportion of Variance 0.00038 0.00038 0.00038 0.00037 0.00037 0.00037 0.00037
## Cumulative Proportion 0.93967 0.94005 0.94042 0.94080 0.94117 0.94154 0.94191
## PC180 PC181 PC182 PC183 PC184 PC185 PC186
## Standard deviation 2.60891 2.60564 2.59720 2.58754 2.58123 2.56722 2.56408
## Proportion of Variance 0.00037 0.00036 0.00036 0.00036 0.00036 0.00035 0.00035
## Cumulative Proportion 0.94228 0.94264 0.94300 0.94336 0.94372 0.94407 0.94443
## PC187 PC188 PC189 PC190 PC191 PC192 PC193
## Standard deviation 2.54755 2.54272 2.53693 2.52110 2.51443 2.50176 2.49610
## Proportion of Variance 0.00035 0.00035 0.00035 0.00034 0.00034 0.00034 0.00033
## Cumulative Proportion 0.94477 0.94512 0.94547 0.94581 0.94615 0.94648 0.94682
## PC194 PC195 PC196 PC197 PC198 PC199 PC200
## Standard deviation 2.48761 2.48630 2.47353 2.46575 2.46547 2.46203 2.44749
## Proportion of Variance 0.00033 0.00033 0.00033 0.00033 0.00033 0.00033 0.00032
## Cumulative Proportion 0.94715 0.94748 0.94781 0.94814 0.94846 0.94879 0.94911
## PC201 PC202 PC203 PC204 PC205 PC206 PC207
## Standard deviation 2.44232 2.42524 2.42155 2.41327 2.40410 2.40045 2.39228
## Proportion of Variance 0.00032 0.00032 0.00031 0.00031 0.00031 0.00031 0.00031
## Cumulative Proportion 0.94943 0.94975 0.95006 0.95038 0.95069 0.95099 0.95130
## PC208 PC209 PC210 PC211 PC212 PC213 PC214
## Standard deviation 2.38676 2.3772 2.3659 2.3640 2.3516 2.3493 2.34192
## Proportion of Variance 0.00031 0.0003 0.0003 0.0003 0.0003 0.0003 0.00029
## Cumulative Proportion 0.95161 0.9519 0.9522 0.9525 0.9528 0.9531 0.95340
## PC215 PC216 PC217 PC218 PC219 PC220 PC221
## Standard deviation 2.33815 2.32761 2.32602 2.32344 2.31705 2.30630 2.30302
## Proportion of Variance 0.00029 0.00029 0.00029 0.00029 0.00029 0.00029 0.00028
## Cumulative Proportion 0.95369 0.95398 0.95427 0.95456 0.95485 0.95514 0.95542
## PC222 PC223 PC224 PC225 PC226 PC227 PC228
## Standard deviation 2.29494 2.28949 2.27964 2.27914 2.27262 2.27049 2.26063
## Proportion of Variance 0.00028 0.00028 0.00028 0.00028 0.00028 0.00028 0.00027
## Cumulative Proportion 0.95571 0.95599 0.95627 0.95655 0.95682 0.95710 0.95737
## PC229 PC230 PC231 PC232 PC233 PC234 PC235
## Standard deviation 2.25362 2.24713 2.24320 2.23783 2.23328 2.23135 2.22494
## Proportion of Variance 0.00027 0.00027 0.00027 0.00027 0.00027 0.00027 0.00027
## Cumulative Proportion 0.95765 0.95792 0.95819 0.95846 0.95872 0.95899 0.95926
## PC236 PC237 PC238 PC239 PC240 PC241 PC242
## Standard deviation 2.22070 2.21429 2.20643 2.20139 2.19659 2.19142 2.18765
## Proportion of Variance 0.00026 0.00026 0.00026 0.00026 0.00026 0.00026 0.00026
## Cumulative Proportion 0.95952 0.95979 0.96005 0.96031 0.96057 0.96082 0.96108
## PC243 PC244 PC245 PC246 PC247 PC248 PC249
## Standard deviation 2.18255 2.17629 2.17102 2.16925 2.15940 2.15753 2.15300
## Proportion of Variance 0.00026 0.00025 0.00025 0.00025 0.00025 0.00025 0.00025
## Cumulative Proportion 0.96134 0.96159 0.96184 0.96210 0.96235 0.96260 0.96285
## PC250 PC251 PC252 PC253 PC254 PC255 PC256
## Standard deviation 2.15245 2.14408 2.13896 2.13529 2.13022 2.12613 2.12188
## Proportion of Variance 0.00025 0.00025 0.00025 0.00024 0.00024 0.00024 0.00024
## Cumulative Proportion 0.96309 0.96334 0.96359 0.96383 0.96408 0.96432 0.96456
## PC257 PC258 PC259 PC260 PC261 PC262 PC263
## Standard deviation 2.11674 2.11184 2.10555 2.10231 2.09442 2.08321 2.08164
## Proportion of Variance 0.00024 0.00024 0.00024 0.00024 0.00024 0.00023 0.00023
## Cumulative Proportion 0.96480 0.96504 0.96528 0.96552 0.96575 0.96598 0.96622
## PC264 PC265 PC266 PC267 PC268 PC269 PC270
## Standard deviation 2.07831 2.07722 2.07396 2.06682 2.06060 2.05420 2.05159
## Proportion of Variance 0.00023 0.00023 0.00023 0.00023 0.00023 0.00023 0.00023
## Cumulative Proportion 0.96645 0.96668 0.96691 0.96714 0.96737 0.96759 0.96782
## PC271 PC272 PC273 PC274 PC275 PC276 PC277
## Standard deviation 2.04489 2.04048 2.03759 2.03429 2.02949 2.02708 2.01828
## Proportion of Variance 0.00022 0.00022 0.00022 0.00022 0.00022 0.00022 0.00022
## Cumulative Proportion 0.96805 0.96827 0.96849 0.96871 0.96894 0.96916 0.96937
## PC278 PC279 PC280 PC281 PC282 PC283 PC284
## Standard deviation 2.01431 2.01207 2.00928 2.00604 1.99801 1.99394 1.98896
## Proportion of Variance 0.00022 0.00022 0.00022 0.00022 0.00021 0.00021 0.00021
## Cumulative Proportion 0.96959 0.96981 0.97003 0.97024 0.97046 0.97067 0.97088
## PC285 PC286 PC287 PC288 PC289 PC290 PC291
## Standard deviation 1.98313 1.97928 1.97424 1.96623 1.96437 1.95750 1.95624
## Proportion of Variance 0.00021 0.00021 0.00021 0.00021 0.00021 0.00021 0.00021
## Cumulative Proportion 0.97109 0.97130 0.97151 0.97172 0.97193 0.97213 0.97234
## PC292 PC293 PC294 PC295 PC296 PC297 PC298 PC299
## Standard deviation 1.9527 1.9503 1.9481 1.9404 1.9397 1.9345 1.9292 1.9274
## Proportion of Variance 0.0002 0.0002 0.0002 0.0002 0.0002 0.0002 0.0002 0.0002
## Cumulative Proportion 0.9725 0.9728 0.9729 0.9731 0.9734 0.9736 0.9738 0.9740
## PC300 PC301 PC302 PC303 PC304 PC305 PC306
## Standard deviation 1.9192 1.9184 1.9106 1.9071 1.90082 1.89513 1.89156
## Proportion of Variance 0.0002 0.0002 0.0002 0.0002 0.00019 0.00019 0.00019
## Cumulative Proportion 0.9741 0.9744 0.9746 0.9747 0.97494 0.97513 0.97532
## PC307 PC308 PC309 PC310 PC311 PC312 PC313
## Standard deviation 1.88745 1.88369 1.87887 1.87545 1.87166 1.86974 1.86813
## Proportion of Variance 0.00019 0.00019 0.00019 0.00019 0.00019 0.00019 0.00019
## Cumulative Proportion 0.97551 0.97570 0.97589 0.97608 0.97627 0.97646 0.97665
## PC314 PC315 PC316 PC317 PC318 PC319 PC320
## Standard deviation 1.86286 1.86242 1.85766 1.85447 1.85066 1.84607 1.84102
## Proportion of Variance 0.00019 0.00019 0.00019 0.00018 0.00018 0.00018 0.00018
## Cumulative Proportion 0.97683 0.97702 0.97720 0.97739 0.97757 0.97775 0.97794
## PC321 PC322 PC323 PC324 PC325 PC326 PC327
## Standard deviation 1.84041 1.83798 1.83053 1.82713 1.82298 1.81486 1.81122
## Proportion of Variance 0.00018 0.00018 0.00018 0.00018 0.00018 0.00018 0.00018
## Cumulative Proportion 0.97812 0.97830 0.97848 0.97866 0.97884 0.97901 0.97919
## PC328 PC329 PC330 PC331 PC332 PC333 PC334
## Standard deviation 1.81062 1.80633 1.80225 1.79790 1.79677 1.79514 1.78791
## Proportion of Variance 0.00018 0.00018 0.00017 0.00017 0.00017 0.00017 0.00017
## Cumulative Proportion 0.97937 0.97954 0.97972 0.97989 0.98006 0.98024 0.98041
## PC335 PC336 PC337 PC338 PC339 PC340 PC341
## Standard deviation 1.78535 1.78336 1.77916 1.77421 1.77190 1.76746 1.76174
## Proportion of Variance 0.00017 0.00017 0.00017 0.00017 0.00017 0.00017 0.00017
## Cumulative Proportion 0.98058 0.98075 0.98092 0.98109 0.98126 0.98142 0.98159
## PC342 PC343 PC344 PC345 PC346 PC347 PC348
## Standard deviation 1.76031 1.75588 1.75407 1.74745 1.74666 1.74249 1.74133
## Proportion of Variance 0.00017 0.00017 0.00017 0.00016 0.00016 0.00016 0.00016
## Cumulative Proportion 0.98176 0.98192 0.98209 0.98225 0.98242 0.98258 0.98274
## PC349 PC350 PC351 PC352 PC353 PC354 PC355
## Standard deviation 1.73481 1.73347 1.72870 1.72773 1.71955 1.71766 1.71140
## Proportion of Variance 0.00016 0.00016 0.00016 0.00016 0.00016 0.00016 0.00016
## Cumulative Proportion 0.98290 0.98307 0.98323 0.98339 0.98354 0.98370 0.98386
## PC356 PC357 PC358 PC359 PC360 PC361 PC362
## Standard deviation 1.70968 1.70678 1.70616 1.70045 1.69860 1.69391 1.69174
## Proportion of Variance 0.00016 0.00016 0.00016 0.00016 0.00015 0.00015 0.00015
## Cumulative Proportion 0.98402 0.98417 0.98433 0.98449 0.98464 0.98479 0.98495
## PC363 PC364 PC365 PC366 PC367 PC368 PC369
## Standard deviation 1.68442 1.68348 1.67878 1.67492 1.67232 1.66921 1.66583
## Proportion of Variance 0.00015 0.00015 0.00015 0.00015 0.00015 0.00015 0.00015
## Cumulative Proportion 0.98510 0.98525 0.98540 0.98555 0.98570 0.98585 0.98600
## PC370 PC371 PC372 PC373 PC374 PC375 PC376
## Standard deviation 1.65987 1.65971 1.65205 1.64991 1.64807 1.64477 1.64227
## Proportion of Variance 0.00015 0.00015 0.00015 0.00015 0.00015 0.00015 0.00014
## Cumulative Proportion 0.98615 0.98630 0.98645 0.98659 0.98674 0.98688 0.98703
## PC377 PC378 PC379 PC380 PC381 PC382 PC383
## Standard deviation 1.64073 1.63537 1.63168 1.63049 1.62775 1.62531 1.62029
## Proportion of Variance 0.00014 0.00014 0.00014 0.00014 0.00014 0.00014 0.00014
## Cumulative Proportion 0.98717 0.98732 0.98746 0.98760 0.98774 0.98789 0.98803
## PC384 PC385 PC386 PC387 PC388 PC389 PC390
## Standard deviation 1.61321 1.60940 1.60472 1.60266 1.60023 1.59636 1.59428
## Proportion of Variance 0.00014 0.00014 0.00014 0.00014 0.00014 0.00014 0.00014
## Cumulative Proportion 0.98817 0.98831 0.98844 0.98858 0.98872 0.98886 0.98899
## PC391 PC392 PC393 PC394 PC395 PC396 PC397
## Standard deviation 1.59165 1.58614 1.58304 1.58137 1.57697 1.57330 1.57192
## Proportion of Variance 0.00014 0.00014 0.00013 0.00013 0.00013 0.00013 0.00013
## Cumulative Proportion 0.98913 0.98926 0.98940 0.98953 0.98967 0.98980 0.98993
## PC398 PC399 PC400 PC401 PC402 PC403 PC404
## Standard deviation 1.57095 1.56448 1.56028 1.55722 1.55495 1.54972 1.54926
## Proportion of Variance 0.00013 0.00013 0.00013 0.00013 0.00013 0.00013 0.00013
## Cumulative Proportion 0.99006 0.99019 0.99033 0.99046 0.99059 0.99071 0.99084
## PC405 PC406 PC407 PC408 PC409 PC410 PC411
## Standard deviation 1.54614 1.54042 1.53538 1.52883 1.52745 1.52263 1.52122
## Proportion of Variance 0.00013 0.00013 0.00013 0.00013 0.00013 0.00012 0.00012
## Cumulative Proportion 0.99097 0.99110 0.99123 0.99135 0.99148 0.99160 0.99173
## PC412 PC413 PC414 PC415 PC416 PC417 PC418
## Standard deviation 1.51436 1.51052 1.50754 1.50249 1.49899 1.49611 1.49414
## Proportion of Variance 0.00012 0.00012 0.00012 0.00012 0.00012 0.00012 0.00012
## Cumulative Proportion 0.99185 0.99197 0.99209 0.99221 0.99233 0.99245 0.99257
## PC419 PC420 PC421 PC422 PC423 PC424 PC425
## Standard deviation 1.49213 1.48359 1.48289 1.48087 1.47553 1.47014 1.46768
## Proportion of Variance 0.00012 0.00012 0.00012 0.00012 0.00012 0.00012 0.00012
## Cumulative Proportion 0.99269 0.99281 0.99293 0.99305 0.99317 0.99328 0.99340
## PC426 PC427 PC428 PC429 PC430 PC431 PC432
## Standard deviation 1.46411 1.46227 1.45956 1.45544 1.45412 1.44819 1.44337
## Proportion of Variance 0.00012 0.00011 0.00011 0.00011 0.00011 0.00011 0.00011
## Cumulative Proportion 0.99351 0.99363 0.99374 0.99385 0.99397 0.99408 0.99419
## PC433 PC434 PC435 PC436 PC437 PC438 PC439
## Standard deviation 1.44173 1.43600 1.43416 1.42627 1.41927 1.41713 1.41544
## Proportion of Variance 0.00011 0.00011 0.00011 0.00011 0.00011 0.00011 0.00011
## Cumulative Proportion 0.99430 0.99442 0.99453 0.99463 0.99474 0.99485 0.99496
## PC440 PC441 PC442 PC443 PC444 PC445 PC446
## Standard deviation 1.41247 1.40958 1.40363 1.40056 1.3974 1.3932 1.3910
## Proportion of Variance 0.00011 0.00011 0.00011 0.00011 0.0001 0.0001 0.0001
## Cumulative Proportion 0.99507 0.99517 0.99528 0.99538 0.9955 0.9956 0.9957
## PC447 PC448 PC449 PC450 PC451 PC452 PC453 PC454
## Standard deviation 1.3882 1.3826 1.3787 1.3768 1.3708 1.3701 1.3594 1.3577
## Proportion of Variance 0.0001 0.0001 0.0001 0.0001 0.0001 0.0001 0.0001 0.0001
## Cumulative Proportion 0.9958 0.9959 0.9960 0.9961 0.9962 0.9963 0.9964 0.9965
## PC455 PC456 PC457 PC458 PC459 PC460 PC461 PC462
## Standard deviation 1.3546 1.3510 1.3484 1.3419 1.3357 1.3316 1.3302 1.32791
## Proportion of Variance 0.0001 0.0001 0.0001 0.0001 0.0001 0.0001 0.0001 0.00009
## Cumulative Proportion 0.9966 0.9967 0.9968 0.9969 0.9970 0.9971 0.9972 0.99728
## PC463 PC464 PC465 PC466 PC467 PC468 PC469
## Standard deviation 1.32270 1.31722 1.31332 1.30827 1.30224 1.29950 1.29569
## Proportion of Variance 0.00009 0.00009 0.00009 0.00009 0.00009 0.00009 0.00009
## Cumulative Proportion 0.99737 0.99746 0.99756 0.99765 0.99774 0.99783 0.99792
## PC470 PC471 PC472 PC473 PC474 PC475 PC476
## Standard deviation 1.29351 1.28688 1.28112 1.27981 1.27214 1.27078 1.26857
## Proportion of Variance 0.00009 0.00009 0.00009 0.00009 0.00009 0.00009 0.00009
## Cumulative Proportion 0.99801 0.99810 0.99819 0.99828 0.99836 0.99845 0.99854
## PC477 PC478 PC479 PC480 PC481 PC482 PC483
## Standard deviation 1.26263 1.26008 1.25008 1.24439 1.24233 1.23246 1.22970
## Proportion of Variance 0.00009 0.00009 0.00008 0.00008 0.00008 0.00008 0.00008
## Cumulative Proportion 0.99862 0.99871 0.99879 0.99887 0.99896 0.99904 0.99912
## PC484 PC485 PC486 PC487 PC488 PC489 PC490
## Standard deviation 1.22696 1.22115 1.21291 1.20544 1.20145 1.18961 1.17458
## Proportion of Variance 0.00008 0.00008 0.00008 0.00008 0.00008 0.00008 0.00007
## Cumulative Proportion 0.99920 0.99928 0.99936 0.99944 0.99951 0.99959 0.99966
## PC491 PC492 PC493 PC494 PC495 PC496
## Standard deviation 1.16193 1.14665 1.14292 1.08014 1.05087 3.685e-14
## Proportion of Variance 0.00007 0.00007 0.00007 0.00006 0.00006 0.000e+00
## Cumulative Proportion 0.99974 0.99981 0.99988 0.99994 1.00000 1.000e+00## [1] 1#Heatmap with 20 PCS (including uncultured)
#Boxplot PC3: heatmap V3
#removal of uncultured samples (ununstim)
## [1] 454 38##
## ATP DEX IFNy IL4 LPS R848 TNFa unstim
## 5 10 79 8 128 42 47 135
## ununstim
## 42#heatmap with 20 PCs without cultured samples: 455 samples
#Boxplot PC16: heatmap V16
#Boxplot PC12: heatmap V12
PCA of 1 region: GFM
## [1] 158 38##
## CC GFM GFS GTS SVZ THA
## 41 158 3 68 131 53
PCA of 1 region: SVZ
## [1] 131 38##
## CC GFM GFS GTS SVZ THA
## 41 158 3 68 131 53
PCA without uncultured samples 1000 most variable genes
PCA without uncultured samples 500 most variable genes
Note that the echo = FALSE parameter was added to the code chunk to prevent printing of the R code that generated the plot.